Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name THAP12P3
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr5:57550367-57550758  UCSC
Strand -
Parental Sequence XM_030829642.1
Parental seq. overlap 341 bp
Parental seq. overlap (%) 9.7%
Genomic Region Intragenic (PPP6R3)
Retrocopy Summary THAP12P3, located on chr5:57550367-57550758, is a retrocopy of the parental gene THAP12. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name THAP12
Full Name N/A
Also known as THAP12
Coordinate chr15:60371769-60403004
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens THAP12P6
Chimpanzee Pan troglodytes THAP12P9
Bonobo Pan paniscus THAP12P10
Gorilla Gorilla gorilla THAP12P9
Orangutan Pongo abelii THAP12P7
Green monkey Chlorocebus sabaeus PRKRIRP2
Crab-eating macaque Macaca fascicularis PRKRIRP6
Rhesus Macaca mulatta THAP12P6
Baboon Papio anubis THAP12P6
Golden snub-nosed monkey Rhinopithecus roxellana THAP12P1
Marmoset Callithrix jacchus THAP12P3
Rabbit Oryctolagus cuniculus THAP12P5
Dog Canis familiaris THAP12P1
Greater mouse-eared bat Myotis myotis THAP12P5
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>THAP12P3
caatattTGATCTTACCAGTCATTTGAACAATCCACATAGTAGacacagaaaatgaataaaagaattgAGGAAAGATGAAATTAGAacactgaaacagaaaaaagttgATGAAAGTTCTGAAcaggaatgaaaacaaagaaaccaaCAACAAGTGTTCAGAACCCCAGTGTGGAAGAAGCCAGCCAAGGGAAGGATGTGGACATTTTGCCTCTAAcccctaaaaagaaagaaaataaagagcacctaaaatctctatttgaaattttgattttgatgggaaaacaaaatatatctctGGATAGACGTgaggttgatgaaatgccagaaGGTCTCTTTACTCCCGATAACATCAAAGCACTGCTGGAGTACAGATAAATTCTGGTGaagagga
>XM_030829642.1
GCATTGTGGGAAGGAGGCGGCAGCGTCTCGGGCGGGCGGGAGGTGCaccagcggcggcggcggcggtaaATCCTCCCGGCCGCTCACAGCACTGTGGAGCCGCGTCTCCAGCCCGGCCTCGGACCGCGGCACCCCTCCTGGCCCTCGCGGCTTCTAGCCCGCCCGCCCCTCCCCCGCGCGTCGGCCCTGCCGAGCCGGCCGGCCGGCCTGGCTCCCCTCCCCGGCCCCGACGGGCGGGCGGACTGCCCTGAggaggcggggaggggagggctgggTCGGCCGGCGGGCGGGCGACGATGCCGAACTTCTGCGCTGCACCCAACTGCACGCGGAAGAGCACGCAGTCCGACTTGGCCTTCTTCAGGTTCCCGCGGGACCCTGCCAGaTGCCAGAAGTGGGTGGAGAACTGTAGGAGAGCAGACTTAGAAGATAAAACACCTGATCAGCTAAATAAACATTATCGATTATGTGCCAAACATTTTGAGACCTCTATGATCTGTAGAACTagtccTTATAGGACAGTTCTTCGAGATAATGCAATACCAACAATATTTGATCTTACCAGTCATTTGAACAACCCACATAGTAGACACAGAAAACGAATAAAAGAACTGAGTGAAGATGAAATCAGGacactgaaacagaaaaaaaTTGATGAAACTTCTGAGCAggaacaaaaacataaagaaaccAACAATAGCAATGCTCAGAACCCCAGCGAAGAAGAGGGTGAAGGGCAAGATGAGGACATTTTACCTCTAACCcttgaagagaaggaaaacaaagaatacCTAAAATCTCTATTTGAAATCTTGATTCTGATGGGAAAGCAAAACATACCTCTGGATGGACATGAGGCTGATGAAATCCCAGAAGGTCTCTTTACTCCAGATAACTTTCAGGCACTGCTGGAGTGTCGGATAAATTCTGGTGAAGAGGTTCTGAGAAAGCGGTTTGAGACAACAGCAGTTAACACGTTGTTTTGTTCAAAAACACAGCAGAGGCAGATGCTAGAGATCTGTGAGAGCTGTATTCGAGAAGAAACTCTCAGGGAAGTGAGAGACTCACACTTCTTTTCCATTATCACTGATGATGTAGTGGACATAGCAGGGGAAGAGCACCTACCTGTGTTGGTGAGGTTTGTTGATGAATCTCATAACCTAAGAGAGGAATTTATAGGCTTCCTGCCTTATGAAGCCGATGCAGAAATTTTGGCTGTGAAATTTCACACTATGATAACTGAGAAGTGGGGATTAAATATGGAGTATTGTCGTGGCCAGGCTTACATTGTCTCTAGCGGattttcttccaaaatgaaaGTTGTTGCTTCTAGACTTTTAGAGAAATATCCCCAAGCTATCTACACACTCTGCTCTTCCTGTGCCTTAAATATGTGGTTGGCAAAATCAGTACCCGTTATGGGAGTATCTGTTGCATTAGGAACAATTGAggaagtttgttcttttttccatcGATCACCACAACTGCTTTTAGAACTTGACaacataatttctgttctttttcagaaCAGTAAAGAAAGGGgtaaagaactgaaggaaatctgCCATTCTCAGTGGACAGGCAGGCATGatgcttttgaaattttagtgGAACTCCTGCAAGCACTTGTTTTATGTTTAGATGGTATAAATAGTGACACAAATATTAGATGGAGTAACTGTATAGCTGGCCGAGCATTTGTACTCTGCAGTGCAGTAACagattttgatttcattgttacTATTGTTGTTCTTAAAAATGTCCTATCTTTTACAAGAGCCTTTGGGAAAAACCTCCAGGGGCAAACCTCCGATGTCTTCTTTGCAGCCGGTAGCTTGACTGCAGTACTGCATTCACTCAACGAAGTGATGGAAAATATTGAAGTTTATCATGAATTTTGGTTTGAGGAAGCCACAAATTTGGCAGCCAAACTTGATATTCAAATGAAACTCCCTGGGAAATTCCGCAGAGCTCACCAGGGTAACTTGGAATCTCAGCTAACCTCTGAGAGTTACTATAAAGAAACCCTAAGTGTCCCAACAGTGGAGCACATTATTCAGGAACTTAAAGATATATTCTCAGAACAGCACCTCAAAGCTCTTAAATGCTTATCTCTGGTACCCTCAGTCATGGGACAACTCAAATTCAATACGTCGGAGGAACACCATGCTGACATGTATAGAAGTGACTTACCCAATCCTGACACGCTGTCAGCTGAGCTTCATTGTTGgagaatcaaatggaaacacaGGGGGAAAGATATAGAGCTTCCGTCCACCATCTATGAAGCCCTCCACCTACCTGACATCAAGTTTTTTCCTAATGTGTATGCATTGCTGAAGGTCCTGTGTATTCTTCCTGTGATGAAGGTTGAGAATGAGCGGTATGAAAATGGACGAAAGCGTCTTAAAGCATATTTGAGGAACACTTTGACAGACCAAAGGTCAAGTAACTTGGCTTTGCTTaacataaattttgatataaaacACGACCTGGATTTAATGGTGGACACATATATTAAACTCTATACAAGTAAGTCAGAGCTTCCTACAGATAATTCTGAAACAGTGGAAAATACctaagagacttttaaaaataggctttCTTATATTTGATATTTGGAAGAAAAGCTGTAAGGTGTATGTAGGCCACTTAATAACTAAATATCTTTGCCTATAGGACTCCATTGAATACATTAGCCATTGATAATCTACCTGTTTAAATGGCACCTGTTTGAACTCTTCATGCTTTGAAGACCTACCTGTTCTTCCAGAAGAGAGTATTGAAAGTGCCATGCTTCCTTTTGCGTGATCTCTGTTGACGGCACTCTGGAATTGTTTCAGTTAAGTCATTTTAGACATAGCATTTATTATCACTGTGGATCTCTACTTGTTGGGTGTTAtgaattctttgaagaaatatattttgaagaggtGTGGGAGGAaggaatacattttataaaatgttatagtGAAGCCCACAATTGACCTTTGACTAATAGGAGTTTTAAGTATGTTAAAAATCTGTACTGGACAGTTACAAGAAATTACTGGAGAAAAGCTTGTGAGCTCACCAAACACGGATTTCAGTGTAGATTTTGTCTTTCTCGAACTTAAAGGAACAAATGACAAAGTTTGAATGGAAAAGCCTGCTGTTGTTCCACATCTCGTTGCTGTTTACATTCCTTTGTGGAGCCTACATCTTCCTAAGCTTTTTAGCAGGTATATGTTGAACACTTCTGTTTCATGATTGAGACAGAATCAGAGGCCATGGATACTGACAACTGatttgtctggtttttttttttttctgtctttttccatGACTCTTACCTACTGCCTCATCTTGATTTATAAGCAAAACCTGGAAAACCTACAAAATAAGTGTTGTGGTTTATctggaaaaatatggaaaatattgcTGTTATTTTTGGTGAAGAAAATCAATTTTGTATAGTTTATTTCAatctaaataaaatgtgaattttgtttAAA

Publications

PMID - Link Title