Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TMED2P2
Plot displaying the genomic locations of a retrocopy (in chr21) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr21:79836186-79837386  UCSC
Strand +
Parental Sequence XM_030821615.1
Parental seq. overlap 1046 bp
Parental seq. overlap (%) 49%
Genomic Region Intragenic (FHIT)
Retrocopy Summary TMED2P2, located on chr21:79836186-79837386, is a retrocopy of the parental gene TMED2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TMED2
Full Name N/A
Also known as TMED2
Coordinate chr10:90782964-90797506
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TMED2P1
Chimpanzee Pan troglodytes TMED2P1
Bonobo Pan paniscus TMED2P1
Gorilla Gorilla gorilla TMED2P1
Orangutan Pongo abelii TMED2P1
Green monkey Chlorocebus sabaeus TMED2P2
Crab-eating macaque Macaca fascicularis TMED2P1
Rhesus Macaca mulatta TMED2P1
Baboon Papio anubis TMED2P1
Golden snub-nosed monkey Rhinopithecus roxellana TMED2P1
Marmoset Callithrix jacchus TMED2P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TMED2P2
TGGCGGCAGTGGCTCTAGAGGTCACAATCCGAGTCCTGGCCTCTGCTCCAGCCCCACTGTGGTGACGCTCGCTGAGCTGCTGTTGCTCCAGACCACTCTCCTGACCATGGTCTTGGGCTATTTCATCAGCATCCACGCACATGAGGAGTGCTTCAGTGAGTCACCTCAGGCACCAAGATGGGCCTCATCTTCGAAGGTGGCTTCCTGGGCATCAACGTGGAGATTACAGGACCTAAGAATAAAAGGATTTATAAAGGAGACAAAGAATCCAGTGGGAAATACACATTTTCTGCTCACATGGATGGAAcacataaattttgttttagtaaCCGAGTGTCCACCATGACTCCAAAGATAGTGATATTCACCATTGATATTGGGGAGGCTCCAAAAGGAGAAGACATGGAAACAGAAGCTCACCAGAACAAACTAGAAGAAATGATCAGTGAGCTGGCTGTGGCCATGACAGCTGTACAGCACGAAGAGGAATACATGAAAGTCTGGGAGAGGACACACAGAGCCATTAGTGACAACACAAACAGCCCAGTCGTCCTTCGGTCGTTCTTTGAAGCTCTTGTTCATGACACTGGGACACATCTACCACCTGAAGAGATTTTTTGAAGTCCAGAGGGTTGTTTCAAAAGCCTCTTCCTGATGATTCCAAACTCATAGTTTACTGTTTACCAAACACCTTGGCGATAATGTCATAAGCcattaatttctgtgttttaattttctgaactATACAGTCACAGCTTATGTTTCTTTGTGATTAATAGAAATTGGAAGAAAACACCTTTTTAGGAAAGTCATAGTGAAAATTTGACAATTGATTGGCAtaatttcctaattgaatgctgCCTCCTTTATATAGGTCCTTTCAGAAATTAAACACTGGAATTGAAATATAggaatatagttttttttaaaaaaaatcttcttttccttttgttttgatAATAAAATGCAGTTTGTTCAGGAAATCAGCACAAAGCCTGATAGTACTTTACTGAAATAACTGTATTCTGTGGATTCCCTCATTCTGTGGTTTAAGCTATTAAGGATTCATTTTGTTGAGCCCTTATGAGAAACAATAGTATGAATCCTGACATTTTCTATGCATGCTCATGGCAGAGCTCTCTGGCTTGGGCATATGCTGCCAGGCTGGGCACTTTTACACTTTgttttcaagttttgcttt
>XM_030821615.1
GGCGCAGGCGGAAGGGGCGGAGCTTAGGCGGCGGTGGCTGAGAAGGCagcggggcggcggcggcggcagcggctcTGGAGGCCGCAGTTCGGGTCCTGGCTTCGGCCTCAGCCCCACCATGGTGACGCTTGCTGAACTGCTGGTGCTCTTGGCCGCTCTCCTGGCCACGGTCTCGGGCTATTTCGTTAGCATCGACGCGCATGCTGAGGAGTGCTTCTTTGAGCGGGTCACCTCGGGCACCAAGATGGGCCTCATCTTCGAGGTGGCGGAGGGCGGCTTCCTGGACATCGACGTGGAGATTACAGGACCAGATAACAAAGGAATTTACAAAGGAGACAGAGAATCCAGTGGGAAATACACATTTGCTGCTCACATGGATGGAACATACAAATTTTGTTTTAGTAACCGGATGTCCACTATGACTCCAAAAATAGTGATGTTCACCATTGACATTGGGGAGGCTCCAAAAGGACAAGACATGGAAACAGAAGCTCACCAGAACAAGCTAGAAGAAATGATCAATGAGCTAGCAGTGGCGATGACAGCTGTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAGGATACACAGAGCCATCAACGACAACACAAACAGCAGAGTGGTCCTGTGGTCCTTCTTTGAAGCTCTTGTTCTAGTTGCCATGACATTGGGACAGATCTACTATCTGAAGAGATTTTTTGAAGTCCGGAGGGTTGTTTAAAAAGCCTCTTCCTGATGATCCCAACTCAGAATTCACTGTTTACCAAACACCTTGGTCATAATGTCATtagtttctccatttttattttctgaactgtACATTCACAACTTATGTTTCTTTGTGATTAATAGATATTGGGGGGAAAACGCCTTTTTAGGAAAATTATAGTGAAAATTTGACAGTTGATTGGCATAACTTCTTGTTTGAATGCTGCCTCCATTATATAGGTCCTTCCAGGAACTCAAACACTGTAAGTGAAATATGGgagtatagtttttattatttcttcttttccttttgttttcataaTATAATGCAGTTTGTTCAGGAAATCAGCACAAAGCCTGATAGTACTTTACTAAAATGACTGCATTCTTTGGATTCCCTCAGTCTGTGGTTCAAGTCAGTAAAGATTCATTTTTGTTGAGTCCTTATGAGAAACAGCAGTTTGAATCTTGACGGTTTCTGCCTGTCCTAATGGCAGAGCTCTCTGACTTGGGCATATGCTGCCAGGCTGGGTACTTTcatactttgttttcttgttttgctttaaaaCTATGACTCAGCTTACATTTTCCTGCATACATTTTTACAAGTACCTTAGGACTCAATCATCTCCACTTAAATTGATGACACAAGCAGCTAATAACCATTTTTGGGTTTCTGCCTAACCCTCTAATTGTCTGTTAAAGCCAATTCTCTGGGTGTCCCAGTGAGTggtggctttttttctttccacactgGCACATTCTCCCACTCTTGGCATGTAAGAAATAAGCATTTACACAATTGGAAAAGTCCGGATTTCTGATGCCAAAGGGTTAAAGCCTCTTGGATTTCATTTCAGTGATATACagccactattttatttttgatcagTGGCCTTTGGGCCACTGTGTAGGGTACTGAACATCAGTGTCAGCAttagggtttttgtttcttttggttctttcttttttggcaCATGTGAATCTTGTTCTGagtaaaatgaaattactttctCTTGTTCTCTGATGATGGgtttaaaattaaaagagcaTCTGGTTTTGGTATGGGGATGATCCAGGATTATGTTGTGACTGATACATATTAGTtacttgtacattttttttttggatctttGCAAGGGGAAAACTACAAGTAACgagttttatataattaatttaaatttgttacAGGTTTTCACGTTCAGGATAAACCATTTTTCCACCTTGGGTGAGAACACTTGCAACAGTTTATTAATGAGGTGACTTTCACCTTAGGACAACTGTTGCATGCCAAGTTTTTTTTTGCGTGTGAAACACTTCAAAATTGATTTAAaagatgtaaatttaaaattggtTGTATCTAATATGCCCCAGGTTCGGTAAAtaaacaattctttttaaaaaca

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