Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name UBE2CP3
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr10:748316-749387  UCSC
Strand -
Parental Sequence XM_030825544.1
Parental seq. overlap 645 bp
Parental seq. overlap (%) 75.8%
Genomic Region Intragenic (GPN3)
Retrocopy Summary UBE2CP3, located on chr10:748316-749387, is a retrocopy of the parental gene UBE2C. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name UBE2C
Full Name N/A
Also known as UBE2C
Coordinate chr13:18240765-18245232
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UBE2CP5
Chimpanzee Pan troglodytes UBE2CP6
Bonobo Pan paniscus UBE2CP5
Gorilla Gorilla gorilla UBE2CP5
Orangutan Pongo abelii UBE2CP5
Green monkey Chlorocebus sabaeus UBE2CP1
Rhesus Macaca mulatta UBE2CP8
Baboon Papio anubis UBE2CP3
Golden snub-nosed monkey Rhinopithecus roxellana UBE2CP9
Crab-eating macaque Macaca fascicularis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>UBE2CP3
GAGTTCTTGTCTCTCTGCCAGCGCCACCCAGATAGCCTCACAAAACTTTGACCCAGCCACTGTCAGTGTCGCCACCGCCCATAAAGGAGCTGAGCCCAGCAGGGGCACTGCCTGGGGCCCTGTAGGCAAAAGGCTACAGCAGGAGCTGATGACCCTCATGATGCCTGGTGACAAAAGAATTTCTTCCTGCCCTGAAAGCCTTATCAAATGGAGGCAATCCATGGAGCAGCTGGCACAGTATATGAAGATCTGAGGTATAAGCTCTTGCTGGAGTTCCTCAATGACTACCCACCCTTATGATGCACCCACAGTGAAGTTCCTCACACCCTGCTACCACCCTAACATGGACACCCAGGGTAGCATGCCTGGACGTCCTGAAGGAGAAGTGGTCTGCCCTGCATGGTATCAGGACCATCCTGCTCTCTATCCGGTGCCTGCTAGGAGAACTCAACATTGACAGCCCTTTGAACACACATGCTACCAAGCTCTGGGAAAACCCCACAGCTTTAAGAAATATCTgcaaggataaaaataaggaagtaCCTGCAAGAAAGCTACTCAAATTAGGTCACCAGCCAGGAGCTCTGACCCAGGCTGCCCAGCCTATCCTTgtgttgtctttttaatttttccttagaTGGTCTGCCCTTTCCGTGATTTCTGTGTAGAACTCTGTATCTTGAGCTGTggtactatttttcttttgttttttaatttaagccTTGGTAGAGCCCTTGTgatgaatattaaataaacacattttggt
>XM_030825544.1
CAAACGCGGGCGGGCGGGCCCGCAGCCCTGCAGTTGCAGTCGTGTTCTCCGAGTTCCTGTCTCTCTGCCAACGCCGCCCGGATGGCTTCCCAAAACCGCGACCCAGCCGCCACTAGCGTCGCCGCCGCCCGTAAAGGAGCTGAGCCGAGCGGGGGCGCCGCCCGGGGTCCCGTGGGCAAAAGGCTACAGCAGGAGCTGATGACCCTCATGATGTCTGGCGATAAAGGGATTTCTGCCTTCCCTGAATCAGACAACCTTTTCAAATGGGTAGGGACCATCCATGGAGCAGCTGGAACAGTATATGAAGACCTGAGGTATAAGCTCTCGCTAGAGTTCCCCAGTGGCTACCCTTACAATGCGCCCACGGTGAAGTTTCTCACGCCCTGCTATCACCCCAACGTGGACACCCAGGGTAACATATGCCTGGACATCCTGAAGGAAAAGTGGTCTGCCCTGTATGACGTCAGGACCATTCTGCTGTCCATCCAGAGCCTTCTAGGAGAACCCAACATTGATAGTCCCTTGAACACGCATGCTGCCGAGCTCTGGAAAAACCCCACAGCTTTTAAGAAGTACCTGCAAGAAACCTACTCAAAGCAGGTCACCAGCCAGGAGCCCTGACCCAGGCTGCCCAGCCTGTCCTTgtgttgtctttttaatttttccttagaTGGTCTGTCCTTTTTGTGATTTCTGTATAGGACTCTGTATCTTGAgctgtggtatttttgttttgtttttgtcttttaaattaagCCTCGGTTGAGCCCTTGTgatgtatattaaataaatgcatttttgtccttttttagaCAA

Publications

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