Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name VTI1BP5
Plot displaying the genomic locations of a retrocopy (in chr21) and its respective parental gene (in chr1a). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr21:21017451-21018505  UCSC
Strand -
Parental Sequence XM_003263595.4
Parental seq. overlap 980 bp
Parental seq. overlap (%) 73.5%
Genomic Region Intergenic
Retrocopy Summary VTI1BP5, located on chr21:21017451-21018505, is a retrocopy of the parental gene VTI1B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name VTI1B
Full Name N/A
Also known as VTI1B
Coordinate chr1a:84648650-84677005
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens VTI1BP1
Chimpanzee Pan troglodytes VTI1BP1
Bonobo Pan paniscus VTI1BP1
Gorilla Gorilla gorilla VTI1BP1
Orangutan Pongo abelii VTI1BP1
Green monkey Chlorocebus sabaeus VTI1BP4
Crab-eating macaque Macaca fascicularis VTI1BP1
Rhesus Macaca mulatta ARG2P1
Baboon Papio anubis VTI1BP1
Golden snub-nosed monkey Rhinopithecus roxellana VTI1BP1
Marmoset Callithrix jacchus VTI1BP3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>VTI1BP5
TCCTGGGCTGCAGTGGCGCGGCGGTCGCCGTGATGGTCACGGGGCTTGGCGGCTGACCCCCGGGCTATGAGAGGGCCCAGCGCCCGGATCTCGGTGGCCACTGCTAGAGCGCGGCCTGCGCCATGGCCACTTTCGCCGCCTCCTCAGAGCATTTCGAGAAGCTGTACGAGATCTTCCGCGGCCTCCATGAAGACCTACAAGGGGTGCCCGAGCGGCTGCTGGGGGCGGTGGGGACCGAAGAGAAGAAGTTAATCAGGGATTTTGATGAAAAGCAACAGGAAGCAAATGAAACGTTGGCAGAGATGGAAGAGGAGCTACGTTATGCACCCCCGTCTTTCTGTAACCCCATGATGTCTAAGCTTCGAAACTACCAGAAGGACCTTGCCAAATTCCATTGGGAGGTGAGAAGCACACCTTTGACAGCCACACCTGGAGGCCGAGGAGACATGATATATGGCATATATGCTGTAGAGAATGAGCATATGAATCAGCTTACAGTCTCAAAGGGCAATGCTTCCGCAAGGCAATGAAAGCCTGAAACAGGCCACCCAAAGTACTGAACGTTCTCATCAGATTGCCATGGAGACTGACCGGATTGGCTCAGAAATCACAGAAGAGCTGGGAGAACAGCAAGACCAGTTAGAACGCACCAAGAGTAGACTGGTAAACACAAGAGAAAACTTGAGCAACAGTCGAAAGATTCTCCGTTCAATGTCCAGAAAAGTGACAACCAACAAGCTGCTGCTTTCCATCATCATCTTACTGGAGCTTGCCATCCTGGGAAGCCTGGTTTACTACAAATTCTTTTGCAACCATTAAACTTCCTTTAGGGAGGGCTTTGTGGACCAGAAGTTTGACTTTGTGAATGCATGATGTTAGGGATGTGGATGGAATAAGCATATTGCTGCTGTGGGCTAACAGTTCAGGGATGAACTGTGTAGCCAgactgtgggaggagggaggaaagatggAAAGCCACTTAAATGAGAAGGAACAGCAATAAGACCAGTATGATATACCAAGGTAATAAATGCTGTTTatgacttctttaaaa
>XM_003263595.4
TGGCGGGGCCCGGGAGGAAGGCGGCCGAGCTGCCCGTCCCGCAGGTCCCCTAGGGCCGTTTCGCTGCGGCCTTTCCCCATCCCGGACCCGGCACTTCTCGGGTTCTGCGACTGCCGCTCGCCCCGGCGCGGCACCGCTCCCTCAAGAGTCGCCTAGGCCGCGCAGTCTCCCGACTTCTCGTCAGGCTTTCGCGCCGGCGCTCCAGCAATCACTGGCTGGAGAAGGTGGGCGTTCCGGCTCGGGAGGACCCTGCCGCGGCCCCGGAAGAGCCTCGTCCTGGGCGGCGGTGGTGCGGCGGTCGCCGTTATGGCCACCGGGCTGGGAGGCTGACCGCCGGGCTAGGAGAGGGCCCAGGGCCCCGAATCTCGGTGGCCGCTGCTCGAGCGCGGCCTGCACCATGGCCTCCTCCGCCGCCTCCTCGGAGCATTTCGAGAAGCTGCACGAGATCTTCCGCGGCCTCCATGAAGACCTACAAGGGGTGCCCGAGCGGCTGCTGGGGACGGCGGGGACCGaagagaagaagaaattgatCAGGGATTTTGATGAAAAGCAACAGGAAGCAAATGAAACGCTGGCAGAGATGGAGGAGGAGCTACGTTATGCACCCCTGTCTTTCCGAAACCCCATGATGTCTAAGCTTCGAAGCTACCGGAAGGACCTTGCTAAACTCCATCGGGAGGTGAGAAGCACACCTTTGACAGCCACACCTGGAGGCCGAGGAGACATGAAATATGGCATATATGCTGTAGAGAATGAGCATATGAATCGGCTACAGTCTCAAAGGGCAATGCTTCTGCAAGGCACTGAAAGCCTGAACCGGGCCACCCAAAGTATTGAACGTTCTCATCGGATTGCCACAGAGACTGACCAGATTGGCTCAGAAATCATAGAAGAGCTGGGGGAACAACGAGACCAGTTAGAACGTACCAAGAGTAGACTGGTAAACACAAGTGAAAGCTTGAGCAAAAGTCGAAAGATTCTCCGTTCAGTGTCCAGAAAAGTGACAACCAACAAGCTGCTGCTTTCCATTATCATCTTACTGGAGCTCGCCATCCTGGGAGGCCTGGTTTACTACAAATTCTTTCGCAGCCATTGAACTTCTATAGGGAAGGGTTTGTGGACCAGAACTTTGACCTTGTGAATGCATGATGTTAGGGATGTGGATAGAATAAGCTTATTGCTGCTGTGGGCTAACAGTTCAGGGATGCACTGTATAGCCAgactgtgggaggagggaggaaagatggAAAACCACTTAAATGTGAAGGAACAGCAACAAGACCAGTATGATATACCAAGGTAATAAATGCTGTTTATGACTTCTTTAAATTT

Publications

PMID - Link Title