Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name YPEL5P3
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr10:9415306-9416392  UCSC
Strand +
Parental Sequence XM_030799483.1
Parental seq. overlap 952 bp
Parental seq. overlap (%) 39.6%
Genomic Region Intragenic (SLC35F3)
Retrocopy Summary YPEL5P3, located on chr10:9415306-9416392, is a retrocopy of the parental gene YPEL5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name YPEL5
Full Name N/A
Also known as YPEL5
Coordinate chr19:56586339-56599732
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens YPEL5P3
Chimpanzee Pan troglodytes YPEL5P3
Bonobo Pan paniscus YPEL5P3
Gorilla Gorilla gorilla YPEL5P3
Orangutan Pongo abelii YPEL5P3
Green monkey Chlorocebus sabaeus YPEL5P2
Crab-eating macaque Macaca fascicularis YPEL5P2
Rhesus Macaca mulatta YPEL5P2
Baboon Papio anubis YPEL5P2
Golden snub-nosed monkey Rhinopithecus roxellana YPEL5P2
Marmoset Callithrix jacchus YPEL5P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>YPEL5P3
TCTGGCAGCCATGGATCTCATTGCCACTCAGAGATTTTAGAACTTCAGCTATAAAAATGGGCAGAATTTTCCTTGATCATATCGGTGGTACCTGTCTGTGTTCCCGTGCAAACTGACACGATCCTGACCAACTGCTCAGAACTCATCTCCACTCAGTTCACAGGCGCCCTGGCCTTTTAACAAGGTAGTTAACCTGCCGTGCAGTGAACTTCAAGATCTTGTCATGCTCACTGGCAGCCACAGGTTCAAGATGTGAGCTGCAAAAGTTGCAATAGCAAACCGGGATGGATTTATGAATTTGCCACTGGAGATAGCCGTGTTATAAGGAAGGCTGTGTGATCCTGGAAAGTGCTCTAGTTCAAGAGAGTGAGGGCTCTGAGGAGCATGTACCATCTGATAATTcttgaagaaaaagagataaattcaTCTTTCCCAGGTCCCCCTTGCTGAAAACAAACATCAGGTGACATTCACTGTCACCTTAGCATCAGAGTCAGATGTATGACCTGCAGGTTGCGAGGATCTAAGAtggaaccttttaaaaaaaattttgtattttccatcCAACAGCAGTGTATAGAGAGAATATCAGACAGATGCCATTAATTTTTTCCCCTATGTTTACATTTTGAGGTAGAAGAGTCTGTCTGCAGCTACATGGTGGgttatgtaagaaaaaatatctgGGCTATTGGATGAAAAGTGTGTTTTATGtgaattttgaaaggaaaatatgaCAAGAGTATTGTTTGAGACTTACTTGGGcttcattttaaacttaaaaaaaattccagttatTTCACTTGATTTGCTAACTTCAGAGAATAGATCTGAATCTGTGCTTGGCACTGAAGGCCCAGTTAGCATGGCTGTGCTGGCTGGTGTGCCATATTCTTGCTGGAAATGAACTGTAGCACCAGAGCCCATTCTTCCTTGTTGATCTTGACCCAAAGCTGTCACCATTCCTAGTTATTTGTTGCCACATGATTGGTGATGATTGGAAACTTTTTCTGAAATGGGCAGAACTGCTTAGTTGTCTTTTATCATGTAACTTAAGCCtagtaatataaataaagtaatacttgg
>XM_030799483.1
GGGAGGGGTGGGCCGCGAACCGGAGGGGTGCGGGAGTGGGGGAGGGTGAGTCAGAGAAGGGGCGGGGCCCCGCGGAAAAGGCAGGGGGCCGAGGAGAGGGGCGGGGCCTAGAAATGAAGGGCGTTCTGGGCCAACAGGCAGAGCTGACTGCGGGGAGGCGGAGCCACGCCGGGTGACTGACGTTGAGGCCCAACCAGGGAGAGGCGGGGCCAAGGCCAGGGCCTGACTAAACCCGGAGACTCGGGTGGCCGAGGGGCTTCATACCAGCTGAAGAGCGAGAAGCCGCTGGCAGCCGCGGATCTCACCACCGCTCAGGGTTTTTAGaacttcagccataaaaatgggcagAATTTTCCTTGATCATATCGGTGGTACCCGTCTGTTTTCTTGTGCAAACTGTGATACGATCCTGACGAACCGCTCAGAACTCATCTCCACTCGTTTCACAGGCGCCACTGGCAGAGCGTTTCTTTTTAACAAGGTAGTTAACCTGCAGTATAGTGAAGTTCAAGATCGGGTCATGCTCACTGGCCGCCACATGGTTCGAGATGTGAGCTGCAAAAACTGCAATAGCAAACTGGGATGGATCTATGAGTTTGCCACTGAAGACAGCCAGCGATATAAGGAAGGCCGCGTGATCCTGGAACGTGCTCTAGTTCGAGAGAGTGAGGGCTTTGAGGAGCATGTACCATCTGATAACTCTTGAAGATACAGAGAGAAATCCATCTTTTCCCAGGTCTCCttcactgaaaacaaaaatctacTTACATACACTGTCACCTTAGCATCAGAGTCGGATTAATGAACTGCAGAACAAGAGGTTGTGAGAATCTAAGATggaacctttctttcttttttttttttaattttgtattttccatccaacagcagtgtgtagagagaatATTATGCAGATGCCGTTAATTTTTTACTCTATGTTTACATCTTGAGGCAGAAGAGTCTGTCTGCAGCTATGTGGTGAGCTatgtaaggaaaaaaatctgGGCTATTAGAGTGAAAAAGTGTGTTTTATGtaaattgtgaaaggaaaatgttaGGAGTATGGTTTTTAAACTTGGgcttcattttaaacttttttttttaaacccagttATTTCACTTGATTTGCTAGCTTCAGAGAAGAGATCCGAATCTGTGCCCAGCGCTAAAGGCTCAGTGTTAGCATGGCTTGTGCTGGCCGGTGTGCCATATTCTTGTTGGAGATGAACCGTAGCACCAGAGCCCATTCTTCCTTGTCAGTCTTGACCCAAAGATGTCACCATTCCTAGTTATTTGTCACCACATAATAGGTGTTGATTGGAAACTTTTTCTGAGATGGGACAGAACTGCTGGGTTGTCTTTTTCCATGTAACTTAAGCatagtaatataaataaagtaataGTTGGATGCTTTTGGTCCTGTGTTGCTTTTAAAAACACCTTATAAAAGGAGAGTATTTGATAAGCAATTTTCTTAGTAGTAAAGTTTCTTTTCATCTCTTAAACTAAACTGACCATGCATATAATATTCTTTGTTTAAATGAAAGCATACTGTTTAAACCCGCAGTATTGCATTTAGAAAACAGTTGAACAGAATGTCAATGTGCATTCATGCAAAAAACATTTAATCTGCATCTGTTTTAGAAAAGGGGTAAATGAAGCAACTTATCTAAAAATACTGCTTTACAAAGCATTTCAGCTTTTTCCCCTTagttttgcattgattttttgaCAAGTCTGTAGAGCCTAATAGTTTCCATCAAAGGCCTAGATCTCttattagcatttttttcagCTCTTCCCTCAGAAGTTCAGTTATTGAAACAAAAACTACTTTGTACCCTCAAATAGAAAGGGATCAAATTTGACCTGGTGTTATTTTAGCCCCAAATTTATGACattacaaagttttaaaatgtaaatgtttctttATCCAAACTACTACTAGATACTCTAGTATTTGCTTCTGGTGGAATTAAATGATGGTAAAATTGGCTaattatttgaatgaatgaatggatggatggatatttTGCATGCTCAATTTCTAGGTCCTTTGTCTAGAAAGGTAATTTGCCTCAGTTGAATTAGTGAAATATTTCTGTCGTTGATATTGAAAGTGACTTCTGAGTACAGTTAAGTTCCTCTTATTTGCCACTGGGCTGTTGGTTAGAAGCATAGGTAACTGATTAAGTAGGTATGATACTGCATTTGAAATAAGTGGACACAAACTATCCTTTCTCCACCATGGACTCAATCTGAGAACAACagcattcatttccattcatttccatacTGGCTTTTGATTATATGCAGATTCCTAGTAGCATGCCTTACCTACAGCACTATGTGCATTTGCTGTCacaataaagtatattttgtctTGCA

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