Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name C29H15orf40P1
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chr29). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr18:39045862-39046299  UCSC
Strand -
Parental Sequence XM_007990230.1
Parental seq. overlap 371 bp
Parental seq. overlap (%) 25.4%
Genomic Region Intergenic
Retrocopy Summary C29H15orf40P1, located on chr18:39045862-39046299, is a retrocopy of the parental gene CUNH15orf40. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CUNH15orf40
Full Name N/A
Also known as C29H15orf40
Coordinate chr29:2641930-2652387
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens C15orf40P1
Chimpanzee Pan troglodytes C15H15orf40P1
Bonobo Pan paniscus C15H15orf40P1
Gorilla Gorilla gorilla C15H15orf40P1
Orangutan Pongo abelii C15H15orf40P1
Gibbon Nomascus leucogenys C6H15orf40P1
Crab-eating macaque Macaca fascicularis C7H15orf40P1
Rhesus Macaca mulatta C7H15orf40P1
Baboon Papio anubis C7H15orf40P1
Golden snub-nosed monkey Rhinopithecus roxellana C5H15orf40P1
Marmoset Callithrix jacchus C6H15orf40P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>C29H15orf40P1
GGGATGCTGGGGCTTGGCAGCGGGCTGAGGCAGCTCAGGGCAGCATTGAGTATTCGGGGCTCCACTGGGCTCCCTCTTGGCACCAAGATGCAGAGGAAAGCTGGCGCGATGACGAAGGGTAAAAGCCAGATCAAAGAACCAGAGAGACCACTTCCTCCCTTAGGTCCTGTGGCAGTTGTTTCTGAAGGTTGTGTCACCATAGCCATCCATGCCAAACCTGGCTCCAAACAAAATACTGTAACAGATTTGACAGCAGAGGCGGTACATGTGGCTATCGGCAGCGCCTCCATCGGAGAGGGAGGATAATGCTGAGCTTTACAGCGTATCTGTCCGAGGTCTTAGAACTCAGGAAGAGTGATGTGGTTTTGGATAAGCGTGGTACCTCGCATGAAAAGGTAGTGAAGCTTTTCGCCTCCACAAATCTAGAAGAAATCTTGA
>XM_007990230.1
AGAGGGCTCTTCCGGCGCCTACGCAGGCGGGGATGCTGCGGCTCCGCAGCGTGCTGAGGCAGCTCCGGTCAACACCCAATACTCGGGGCTCAGCTCGGCTTCCTCTTCGCGCTGAGATGCCTAGGAAGGCTGGTGCGACGACTAAGGGGGAAAGCCAGAGCAAGGAACCAGAGAGACCATTTCCTCCCTTAGGTCCTGTGGCAGTTGATCCTAAAGGTTGTGTCACCATAACCATCCATGCAAAACCTGGCTCCAAACAAAATGCTGTAACAGATTTGACAGCAGAGGCCGTAAATGTAGCTATCGCAGCACCTCCATCAGAGGGAGAGGCTAATGCTGAGCTCTGTCGGTATCTTTCCAAGGTCCTAGAACTCAGGAAGAGTGATGTGGTTTTGGATAAGGGTGGTAAATCTCGTGAAAAGGTGGTGAAGCTTTTGGCTTCTACAACTCCAGAAGAGATCTTGGAGAAATTAAAAAAGGAAGCCAGAAAAACATAAAAGCAAGAAATGAggacggtctcagtggctcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttcgagaccagcctgaccaacatggtgaaatcccatctctaggaaaaatacaaaattagctggatgtgatggcgcatgcctgtaatcccagttactcaggagggtgaggcaggagaattacttgaacccggggggcagaggttgcagtaagccgagatcacgccattgcactccagcttgggcaacaagagtgaaaccccctccccccccaaaaaagaaatgaaaaaTACATCCTTGAGAAACTTTTTTATTGCTGATGATAAAGAGACTGTTAAACAGAAAAATATACTACATGCATAGAAGAACATGGGGGACATATATAGGTATATATTCGAGTAAGACTCCAAAAAGTAGAAATTTAGAAAGTGCTATACATTGAATCAGGTTCTAAAATCCCTAACCCCAAACAGCCTGGAACATGTTACTCTGATTTCATGGCATTGTAAAATAACAGAGTTGGAAAGAATATTCAATATGACCTGATTTAACACCTTTCATTCTGTTGCGGGGGGCTTTTGATATCCTATATCCagaagttgagagacttactcaagattgtaccatgcaagctggcaactagaacccaaatcctttgactccttgttgaatgcagtttttctaGATTGTAAATTAAAAATCGTATCTCcacaacggttctggaatttgggggattgccttctaatccagtttacaagtgacagaaaacctgttatgctgctttgtagtcttaccttaGATTTTAAAATGCTAATTTAAATGTAAAAATGTTTTTTTTTTTTTGTTTTACATCTTTTAAAGACTATTGACCATTTTGTGGAAAAAGGAAAGAAAAATCATGACTTGTAATTAAATGTGAACTACAATTTTTGAGAA

Publications

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