Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CHCHD3P2
Plot displaying the genomic locations of a retrocopy (in chr21) and its respective parental gene (in chr21). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr21:59635987-59636250  UCSC
Strand -
Parental Sequence XM_007982963.1
Parental seq. overlap 219 bp
Parental seq. overlap (%) 14.5%
Genomic Region Intragenic (ZNF804B)
Retrocopy Summary CHCHD3P2, located on chr21:59635987-59636250, is a retrocopy of the parental gene CHCHD3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CHCHD3
Full Name N/A
Also known as -
Coordinate chr21:101424017-101715708
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CHCHD3P4
Chimpanzee Pan troglodytes CHCHD3P2
Bonobo Pan paniscus CHCHD3P2
Gorilla Gorilla gorilla CHCHD3P1
Orangutan Pongo abelii CHCHD3P4
Gibbon Nomascus leucogenys CHCHD3P2
Crab-eating macaque Macaca fascicularis CHCHD3P1
Rhesus Macaca mulatta CHCHD3P1
Golden snub-nosed monkey Rhinopithecus roxellana CHCHD3P3
Marmoset Callithrix jacchus LOC100412273P2
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CHCHD3P2
CCAATGAGCAGTTAACTAGAGCTATTCTATGTGAGAGGATATCAAGTAAGGAGGAACATTCTAAGACAAAGCACCTGGCTAAGAAGCTGGAAAAGACAGATGGAGTGATAAAGAAACAAGACGCATTTTGAAAGGAGCAGCTGGCTAGACTAGAGGAAAGGAACTTAGAGTTCTGCAAGGTCACCACTCAACATAATTAGAAAGCTGCTGAAGAGGTGGCAGGAAAGTTCAAGTACATAAGTATCATCCAGTCTGTACTGATCC
>XM_007982963.1
TCTCCTTGCTTCTGGGGTCGTGGCCTTGCTCCCGCTGTGCGGGAAAAGAATCCAGGCCCTTCCACGCGCGTGTGGGCGCGGGGGCCCCGAAGTGCTCGTGGTTCCGCGCTAGGTCTCCGCTGGGTCAGGAACCGGCGCCATGGGTGGGACCACCAGCACCCGCCGGGTCACCTTCGAGGCGGACGAGAATGAGAACATCACCGTGGTGAAGGGCATCCGGCTTTCGGAAAATGTGATTGATCGAATGAAGGAATCCTCTCCATCTGGTTCGAAGTCTCAGCGGTATTCTGGTGCTTATGGTGCCTCAGTTTCTGATGAAGAATTGAAAAGAAGAGTAGCTGAGGAACTGGCATTGGAGCAAGCCAAGAAAGAATCTGAAGATCAGAAACGACTAAAGCAAGCCAAAGAGCTGGACCGAGAGAGGGCTGCTGCCAATGAGCAGTTAACCAGAGCCATCCTTCGGGAGAGGATATCAAGCGAGGAGGAACGCGCTAAGGCAAAGCACCTGGCTAGGCAGCTGGAAGAGAAAGACCGAGTGCTAAAGAAGCAGGATGCATTCTACAAAGAACAGCTGGCTAGACTGGAGGAGAGGAGCTCAGAGTTCTACAAAGTCACCACTGAACAGTATCAGAAAGCTGCTGAAGAGGTGGAAGCAAAGTTCAAGCGGTATGAGTCTCATCCAGTCTGTGCTGATCTGCAGGCCAAAATTCTTCAGTGTTACCGTGAGAACACCCACCAGACCCTCAAATGCTCCTCTCTGGCCACCCAGTATATGCACTGTGTCAATCATGCCAAACAGAGCATGCTTGAGAAGGGAGGATAAAAACTTTCAGAACGAGCAAAACACCATCAACGTTAATTCCAGAGATGGAACATTTTTTTTCCTAGTAAGAAAATAACCCATTTGAAGAGAAGACCACTAATGAGAAGACCACTAAAGAGAGACACCAAGAATGGATTCAGCAGAATCATTTCACATTTTGAACAGGAGCAGTTTGAAGGGCCAAAGCCGTGATCAGGGATCAGTCATTAAAGGACGCACTTCAGTATTAGTAAACCCTCTTAGGATGATTAAAAGAGAAGGGCAGCCCTCTCCACCATTTGGTACTTTCTATTCAACTTCCACTGACCATAAAATGTTTCTCTTCTGAGCTAGCCCCATCATGTGGTGAACCTCCACCCTAACAAAGTAGGATGGGGTGGGGGGCTAAATTAATTGGAGTGGGGTGAGGAGAGAGCCAGAAAACATGGATCTGGGGGCAGCAGTGCTGGGTGTAGAGAGCCAGAAAACATAGATCTGGGGGCAGCAGTGCTGGGTGGAGAGAGCCAGAAAACATAGATCTGGGGGCAGCAGTGCTGGGTGGAGAGAGCCAGAAAACAGATCAGGAGGCCGCAGTGCTGGGTGGAATTGTCGAGGCTGTGGCGTGTTGGGTTTCTCTCTCTCTCTTTTCTCCTTTGATTATGTAAGAGCTGTTTCATTTTAACTTATTATGGTGATTATACA

Publications

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