Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name CLNS1AP1
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr17:17031533-17032896  UCSC
Strand +
Parental Sequence XM_008020251.1
Parental seq. overlap 1128 bp
Parental seq. overlap (%) 79.3%
Genomic Region Intergenic
Retrocopy Summary CLNS1AP1, located on chr17:17031533-17032896, is a retrocopy of the parental gene CLNS1A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CLNS1A
Full Name N/A
Also known as -
Coordinate chr1:68830943-68853490
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CLNS1AP1
Chimpanzee Pan troglodytes CLNS1AP3
Bonobo Pan paniscus CLNS1AP3
Gorilla Gorilla gorilla CLNS1AP3
Gibbon Nomascus leucogenys CLNS1AP3
Crab-eating macaque Macaca fascicularis CLNS1AP2
Rhesus Macaca mulatta CLNS1AP2
Golden snub-nosed monkey Rhinopithecus roxellana CLNS1AP2
Marmoset Callithrix jacchus CLNS1AP1
Orangutan Pongo abelii Without Homology
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CLNS1AP1
ACCTGAGCCGGCAGAGGGGCATCTGCGGCTGCAGCCAGACACCAAGGCTGTGCTGAACAGGAAGGGCCTCCGCCCCAGTACCCTTTACATCGCTGAGAGCCACCTGTCTTGGTTAGATGGCTCTGGATTAGGATTCTCACCGGAATACCCCACCATTAGTTTACATGCATTATCCAGGGACCGACCTGTCTAGGAGAACATTTGTATGTTACAGTGAATGGCGAATTTGAGGAATCCAGAGAATCTGTTGCTGATGAAGAAGAGGAAGACAGTGATGATTATGTTGAACTTATTCTGAATTTATATTTGTACCTAGTGATAAATCAGCATTGGAGGCAATATTCACTGCAATGTGTGAATGCTGGGCCTTGCATCCACATCCTGAGGATGAGGATTCAGATGACTACGATGGAAAGAATATGATGTGGAAGCACATGAATGAGGACAAGGGGACATCCCTACATTTTACACCTATGAAGATGGATTATTCCATTAACAGCAGAAGGCCAAGCCACATTGGGGAGATTAGAAGAAAAAGTTTCTCAGTCTGTGGACAGCCAGTATAATATGGCTGGGGTCAGGAGAGAAGATTCAGTAAGATTATGAAGTTGGGATGGAGGTGGATATCACACCAACAGTTGCTGGACAGTTTGAGGATGCAGATGTTGATCACGGAAAATAATTTATGCAGGTTTGAGATTCTGCTCCaGCAACAACAACAAAAAATTGTGCTCCTAACTGTAGGAGAGAACTTGATGCCTTTTCCACTCTGGATCAAAGTTGATGAAAGTCTTTTTCCTTTTCCAAAACCCAACCTGAACCAGTTCTTTCTTGAGACAGACTATACTGAGATATCAAGTTGTCACCAGCATAAGAGATACTATGACCTTTATTAACTTGATGAATTAACTTAACCAAGAGGGTATTTGTAGTTTATTCGTTACCCCAAAACTTTATGTGTCTGAGTACCCTCTGAGCAGGCCTATAATTCCTGCCTTCATTGTATGTATCTTCTGGAAGCAAGCAGACCTATGTGGTGAAAATGCACGGGAGCTTGGAGTTACAGGTAGACTGGGAAAGAGAGGGTTCCTTTCACCATGTTTTACCAGGCTGCTCTGTTATAACCTCTTAGGTTATATTTTTTAATTTCTAGCCTTTGAGATTAGTTTCTGTAACAGAACCAGTGAGTGAGTCTGGGATGAAGTCCTCAAAGTATTTCAAATGGTAATTATTTTGTTTTTGTAATAGCTTAACAAACCTAGGTTTTCTATA
>XM_008020251.1
TGTTCTTCCGGGGTGAGTGCCTCTTCCAGGGCGAGCGGTGTGGTGCAGGCATTGCTGTGTTCTAACTCCCTCAGGGGCTGTGTTGTCGCACTTTCTGCTGCTATGAGCTTCCTCAAAAGTTTCCCGCCGCCTGGGCCGGCGGAGGGGCTCCTGCGGCAACAACCAGACACCGAGGCTGTGCTGAACGGGAAGGGCCTCGGCACTGGTACCCTTTACATCGCTGAGAGCCGCCTGTCTTGGTTAGATGGTTCTGGATTAGGATTCTCACTGGAATACCCCACCATTAGTTTACATGCATTATCCAGGGACCGAAGTGACTGTCTAGGAGAGCATTTGTATGTTATGGTGAATGCCAAATTTGAAGAAGAATCAAAAGAACCtgttgctgatgaagaagaggaagacagtgatgatgatgttgaACCTATTACTGAATTTAGATTTGTGCCTAGTGATAAATCAGCATTGGAGGCAATGTTCACTGCAATGTGCGAGTGCCAGGCCTTGCATCCAGATCCTGAGGATGAGGATTCAGATGACTACGATGGAGAAGAATATGATGTGGAAGCACATGAACAAGGACAGGGGGACATCCCTACATTTTACACTTATGAAGAAGGATTATCCCATCTAACAGCAGAAGGCCAAGCCACATTGGAGAGATTAGAAGGAATGCTCTCTCAGTCTGTGAGCAGCCAGTATAATATGGCTGGGGTGAGGACAGAAGATTCAATAAGAGATTATGAAGATGGGATGGAGGTGGATACCACACCAACAGTTGCTGGACAGTTTGAGGATGCAGATGTTGATCACTGAAAATGATTTATGCAGGTTTAAGATTCTGCTCCTAACTGTAGGAGAGAACTTGGTGCCTCTTCCACTCTGGAGTGAAGTTGATGAAAGTCTTCTTTCTTTTCCACAACCCAACCTGAACCAGTTCCTTCTTGAGACAGACTATACTGAGACAATAAGTTGTCACCAGCAGAAGATAGATAATATGACCTTTATTAACTTGATGAATTAACTTAACCAAGAGGGTATTTGTAGTTTATTATTTACCCCAAAACTTTCTGTGTCTGGGTACCCTCTGAGTAGGCCTATAATTCCTGCCTTGACTGTGTGCATCTTTTGTAAGCTAACAGATTTATGTGGTGAAAATGCCCAGGAGCTTGGTGTAGGTAGACTGGGTAGGAAAGAGAGAGCTCCTTTTGCCATGTTTTACCAGTCTGCTGTTATAAACTCTTAGGTTATATCCTTTAATTTCCAGTCTTTTAGGTTAGTTTCTGTAACAGAGCAAGTGAGTCTTGGATGAAGTCCTCAAAGTACTTCAAATGGTAATTGTTTTGTTTTTGTAATAGCTTAACAAATAAACCTAGGTTTTCTATA

Publications

PMID - Link Title