Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name EI24P3
Plot displaying the genomic locations of a retrocopy (in chr21) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr21:113622957-113624849  UCSC
Strand +
Parental Sequence XM_008021391.1
Parental seq. overlap 1544 bp
Parental seq. overlap (%) 66.8%
Genomic Region Intragenic (ITFG1)
Retrocopy Summary EI24P3, located on chr21:113622957-113624849, is a retrocopy of the parental gene EI24. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name EI24
Full Name N/A
Also known as -
Coordinate chr1:116711922-116727208
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens EI24P4
Chimpanzee Pan troglodytes EI24P4
Bonobo Pan paniscus EI24P4
Gorilla Gorilla gorilla EI24P4
Orangutan Pongo abelii EI24P4
Gibbon Nomascus leucogenys EI24P4
Crab-eating macaque Macaca fascicularis EI24P3
Rhesus Macaca mulatta EI24P3
Baboon Papio anubis EI24P3
Golden snub-nosed monkey Rhinopithecus roxellana EI24P5
Marmoset Callithrix jacchus EI24P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>EI24P3
TGGATCCTTCATAGTGACAGATTTTGGGGTACTTCCGCCTCCTCTGTGTAGTTGATAGTTTGGGTGGTGAAGAGATGCCTGACAGTGTTAAAACCTTTCTCCAGGACCTTGGCAGGGGAATCAAATATTCCATCTAGGGTACTTTTACAGTCTCCAAACTCCATGCTTGAATCCAGCAAAAGGGAGAGGAGCAGCACTGAAGAAGGGCAAGTAGTGTCCTGGCACAGTGAACCATGTATTGTTAGTAGAACTTTTTGGTGTTGCGCTTGGAATGGTAGAGTGTTCTGGTCCAGTCTCCTCCTGTTTTATTGAGTGTTTATTCTTCTGCTTTGGTCAGTGACACCCTGAATTATTGGTGATCTATCACGACATGGAGATGCTCAGTCATGGCTAGAATTCTTCCTCATATCAATCTTAAGTGCTCATTGGGTGCTTCCTTGTTTGTGCCTAGCAAAGTTGTGAATGCCGTTTGGTTTCAAGATATAGCTGATCTGGCATTCGAGAAACCAGTGAGGAAGCCTCACCCATTTCCTAGTGTCTGCAAAGTAATTGCTGACTTGCTCTCCAACCTTTTGCTGCAGGCTCTTTTCCTCAGTCAAGGAGTGTTTGTGAGTATCTTTCCCATCCATCTTGTTGTTCAGCTGGTTAGTCTCCTGCATATGTCTCTTCTCTACGCACTGTGCTGCTTCAAATATTGTTGGTTCAGTAAAGGAATTGGAGCGCACCAGCAGTTGTCTAACATAGAAAGGAATTGGTCTTACTGTTTTGGGTTTGGTTTGCCCTTGGCTTTTCTCATGGCAATGCAGTCTTCATTACCAGTGCAGCCTTATTATCAGTGGCTGCCTCTTCTCTATCCTTGTTCCTTTATTCGTCTATCCTTGTTCTTTATCAGTGCCAATGAAGCAAAGACCCCTGGCACAGCGTACCTCTTCCAGTTGTGCCTCTTGCCCTTGGTGATCTTGCTAAGCAACAGACTCTTACAGGACAGTCTACCTGCAGTCTGCCCTGAGCAGCTTAACCTGTTTAGGGCAGTTCCCTTCACTGCATCCATCTCCTGCCAAACTGAAGGCTACTGCCATGCAAAGGGTATGGGTGAGATAGCAAGGAGGCTGTATTCACTTCCCCCTGCCACGAGGGGCAGAACCCACTCTGCCAAGGTTCTTCTGTGTATTCCCTTCTTTCTGAGGTATCAGAATTTTTGTCTCTGGTGCACATAAGGCAGAATCTTCCTGACACCGGTGTGTGGATTTTTAACACCATCACGCGTCTGAAAGGAACACAGATTTTTCTGCAGCTATTTTCTAGCATTTGCCAGTCCCTGTGCCTGGACTGATTTGAATACTTTGTTTTTCTTCTTGTGCCATTTACCCCCACTCCCCACCTTTCCTTCATGCCATCTACTACCCTTGGATGAATGAATTTCATAATTCTAGCTGTTGTATTTTGTGGATTTGTTTttctgtgtttctgtgtttctgtgAAGCACATCCATTTGATGTGGGAGGTAAAGGAGTGTTCCAGTTGCTCCTGGTCACTCCCTTTATGGCCATCACCGTCTTGCTTTTTGTAACTCAGGTTAGCTATTGGTCTCTCTTGCTTCACTGCaGACTGAGGCGATGGGACAGGAGGAAAGGCCTCACAGACAGATCCGCTGGGCTTTGAAGTGATTTTCTTTCTTTCCCTTGAAGAGGAAAATGCTATTTTCACTGGTACATTTGAAGTCCCCCAAGTATGGGAAGGTACCAATTCTGGACAAGTGCCACTGCAACATAACACTCAGAGAACCTGAACTTTTCAACTC
>XM_008021391.1
CAACTCTGGGCCCCGCCTCGTCGCGCCGGCTGGTTCTTCGCGCCCGCCCGACTTCCCAGCGGCCCCGTGCGGCCCGGGCATGCCCAGTGCGGGCGCAGCGGCCCCGGCCCTGGAAGCGCCCCGGCGGAGCGGGCCCGCGGTGGGCGAGGGGCCGGGCCGGAGCCGCGGCGGCGGAGCTGCGGATCCTTCATGATGAGAGATTTGGGGACACTTCTCTCTCCTCTGTGTAGTTGATAGTTTGGTGGTGAAGAATGGCTGACAGTGTCAAAACCTTTCTCCAGGACCTTGCCAGAGGAATCAAAGACTCCATCTGGGGTATTTGTACCATCTCAAAGCTAGATGCTCGAATCCAGCAAAAGAGAGAGGAGCAACGTCGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAAGAGCCCAGAGTATAGAGCGGAAGCAAGAGAGTGAGCCACGTATTGTTAGTAGAATTTTCCAGTGTTGTGCTTGGAATGGTGGAGTGTTCTGGTTCAGTCTCCTCTTGTTTTATCGAGTATTTATTCCTGTGCTTCAGTCAGTAACAGCCCGAATTATCGGTGACCCATCACTACATGGAGATGTTTGGTCGTGGCTGGAATTCTTCCTCACGTCAATTTTCAGTGCTCTTTGGGTGCTCCCCTTGTTTGTGCTTAGCAAAGTGGTGAATGCCATTTGGTTTCAGGATATAGCTGACCTGGCATTTGAGGTATCAGGGAGGAAGCCTCACCCATTCCCTAGTGTCAGCAAAATAATTGCTGACATGCTCTTCAACCTTTTGCTGCAGGCTCTTTTCCTCATTCAGGGAATGTTTGTGAGTCTCTTTCCCATCCATCTTGTCGGTCAGCTGGTTAGTCTCCTGCATATGTCCCTTCTCTACTCACTGTACTGCTTTGAATATCGTTGGTTCAATAAAGGAATTGAAATGCACCAGCGGTTGTCTAACATAGAAAGGAATTGGCCTTACTACTTTGGGTTTGGTTTGCCCTTGGCTTTTCTCACAGCAATGCAGTCCTCATATATTATCAGTGGCTGCCTTTTCTCTATCCTCTTTCCTTTATTCATTATCAGCGCCAATGAAGCAAAGACCCCTGGCAAAGCGTAtCTCTTCCAGTTGCGCCTCTTCTCCTTGGTGGTCTTCTTAAGCAACAGACTCTTCCACAAGACAGTCTATCTGCAGTCGGCCCTGAGCAGCTCCACTTCTGCAGAGAAGTTCCCTTCACCGCATCCATCACCTGCCAAACTGAAGGCTGCTGCAGGCCACTGAGTTGCCTGCCATCCAAAGGGGATGGGCGGGATTGGAAGAAAGCTGTGGCAGCTCTTTTCCCTGTTCACCTCCCCCTGCCAGGGAAGGCAGGACCCACTCTGCCAAGGGCCCTCTGCATATTCCCTTCTCTCTGAGGAATTGAAATTTTTGTCTCTGGTGCACGTAAGGGAGAATGTTCCCTGACACCAGTGTGTGGATTTTTAACATCACCGTGAGTCTGAAAGGACCACAAGTTTTTCTGCAGCTATTTTCTAGCATTTGCCAGTCCCTGTGCCTGGACTGATTTGAATACTTTGTTTTTCTCCCTGTGCCATTTATCCTTCCACCTTTCCATCCTGCCTTCTACCACCCTTGGATGAATGGATTTTGTAATTCTAGCTGTTGTATTTTGTGGATTTGTTATTTTTGTTGTTTTTCTGTGAAGCACATACATTGGATATGGGAGGTAAAGGAGTGTCCTAGTTGCTCCTGGTCACTCCCTTTATAGCCATTACTGTCTTGTTTCTTGTAACTCAGGTTAGGTTTTGGTCTCTCTTACTCCACTGCaaaaaaaaaaaaaaaaaaaaaCCCTGAAGAGATGAGATAGGAGGAAAGGCCTCACAGCCAGTTCTGCTGGGTTTTGAGGAGTGATTTTCTTTCTTCCCCTTGAAGGGGAAAAAGCTATTTTCACTGGTACATTTAAAGTCCCCCAACTATGGGGAGGTACCAATTCTGGACAAGTGCCACTGCAACAACACTAAACCTGAACTTTTCAACTCCGTTGGGGGTGGGAGGCGGTGGGCAGAAATTTACTATTGGCCACTGCCAGGTCTGTTTCATATTTCAAAGGAATATTGGGTGCTGCAAATAGGAACTGAAGGGGTAAATGTATTAAACCTGTGATTGGTTGTTTTCCTGTCATTTTAAGAGACTAAATGTGGGGGGCAGATGTCAAAATACTTGTACAATTTTAAAATGTCACAATTAAACGTGAGCTGGTTTCCCACAAAGTG

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