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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name IFITM1P2
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr8:56821359-56821582  UCSC
Strand +
Parental Sequence XM_008002932.1
Parental seq. overlap 196 bp
Parental seq. overlap (%) 28.6%
Genomic Region Intergenic
Retrocopy Summary IFITM1P2, located on chr8:56821359-56821582, is a retrocopy of the parental gene LOC103238018. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC103238018
Full Name N/A
Also known as IFITM1
Coordinate chr1:128309-129543
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens IFITM3P8
Chimpanzee Pan troglodytes IFITM3P6
Bonobo Pan paniscus LOC100971164P7
Gorilla Gorilla gorilla LOC101128980P9
Orangutan Pongo abelii LOC100453977P6
Gibbon Nomascus leucogenys LOC100594097P6
Crab-eating macaque Macaca fascicularis LOC102145938P4
Rhesus Macaca mulatta LOC697829P3
Baboon Papio anubis LOC100999022P5
Golden snub-nosed monkey Rhinopithecus roxellana LOC104655295P2
Marmoset Callithrix jacchus LOC118145581P28
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>IFITM1P2
ATCCACCATGATCCACATCTGCAGCGAGACCTCTGTGCCTGACCATGTCATCTGGTCCCTGTTTAACACCCTCTTTATGAACTCCTGCTGCCTGGGCTTCATAGCATTCGCCTACTCCATGAAGTCTAGGGATAGGAAGATGGTTGGTGACCTGATCAGGGCCCAGGCCTATGCCTCCACTGCCAAGTGCCTGAACATCTGGGCCCTGGTTCTGGACATCCTCA
>XM_008002932.1
TAAGAGAAATACACACTTCTGAGAAACTGAAACAACAGGGGAAAGCAGGGCTCACTGCATCCGGACACCACAGCTCCACTTCCCTCCACGCTGAAAACCACACTTCTCGAACCTTCACTCAACACTTCTTTCTCCAAAGTCAGAAAATGCACAAGGAGGAGCACGAGGTGTCTGTGCTGGGGGCACCCCATAGCACCATCCTCCCAAGGTCCACCATGATCAACATCCAAAGCGAGACCTCCGTGCCCGACCATGTCGTCTGGTCCCTGTTCAACACCATCTTCTTCAACTGGTGCTGCCTGGGCTTCATAGCGTTCGCCTACTCCGTGAAGTCTAGGGACAGGAAGATGGTTGGCGATGTGACCGGGGCCCAGGCCTATGCCTCCACCGCCAAGTGCCTGAACATCTCGGCCCTGATTGTGGGCATCCTCATGACCATCGGATTCATCCTGTTACTGGTGTTTGGCTCTGTGGCAATCTACCATGTTATGTTACAGATCGTACAGGAAAAACAGCGTTACTAGTAGCTGCCCATAGCCCGCGACCCTTGTACTCCACTTTGCAATGCTGGCCCTCACGCTGGGGCTGTTGTCCCTGTCCCCTTGGTCCTCCCCCTAGATACAGCATTTTATCCCCACACACCTGTCCACAATGACATTCAATAAAGTGCACGTGCTTGTGATGA

Publications

PMID - Link Title