Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name KDM3AP1
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr10:74998614-74999118  UCSC
Strand -
Parental Sequence XM_007969985.1
Parental seq. overlap 398 bp
Parental seq. overlap (%) 8.2%
Genomic Region Intragenic (GPCPD1)
Retrocopy Summary KDM3AP1, located on chr10:74998614-74999118, is a retrocopy of the parental gene KDM3A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name KDM3A
Full Name N/A
Also known as -
Coordinate chr14:20668215-20721854
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens KDM3AP1
Chimpanzee Pan troglodytes KDM3AP1
Bonobo Pan paniscus KDM3AP1
Gorilla Gorilla gorilla KDM3AP1
Orangutan Pongo abelii KDM3AP1
Gibbon Nomascus leucogenys KDM3AP1
Crab-eating macaque Macaca fascicularis KDM3AP1
Rhesus Macaca mulatta KDM3AP1
Baboon Papio anubis KDM3AP1
Golden snub-nosed monkey Rhinopithecus roxellana KDM3AP1
Marmoset Callithrix jacchus KDM3AP1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>KDM3AP1
ATCAAAATGACTGAAGATTTTGTTTCTTTAGAGCATGTTAAACAGTGCTCCTGGTTTACTCAGTAATTCCGTTTTCTGTCACAGATTCATACCAATCACGAAGATGTATCACAGGTGAAGCACATTATCTACCATGCATTGAAAGATGTTGCTGCTATACTAAAAACCAGTGGATCTGGTTTTGTTAAACTCCAGGGTCTCAGAGATGCCTCTACCCACGCACAAATGGAAGTGAAATATTGGCAGCCGCTCAAACTCTTCAGGCAAGATTCTGGTGGACTTTGAGGATCATGTTACCTCATCTTTTATTCTATTTTTAAACCGTATTGACTGGCGAGAGTACTCTGTTTAATATATATTTATGGTGTTTACAGATAATAAGTGTGTATGCATAGTAACTGCAGAATATGGAGCTTTAAATTGCAACTTCTCATCTAGTGCAGAACTTTTACTAAGCTCTAAAAACAAAACCTCTTTGCAGTTCTGGAACAATACCTGCAGTTAA
>XM_007969985.1
GGAATCGCGGGCTCGCCCACCCTCCCCCGCGGGGCCGCCCGGGGCGGGGACCCAGCCGCCCGGGACCGGCGCTCTGCACCGGGGGCCTTTTCTTTTAGGGGCTGAGGGCTGAACACTTTCACATCCACTCGAGCCGCAGATAATTCTTCTCTCACTCTCTCTGCGTTTGCGTTTGAGCTGTTAGAGAAGCCAAACTTGGGAGAGCGAGGGTCACGCGGCGCTGGGGCCCGGGGAGGAGCCCTTCCTGCAGGCGTGGAAACCATGGTGCTCACGCTCGGAGAAAGTTGGCCGGTATTGGTGGGGAAGCGATTTCTCAGTCTGTCCGCAGCAGACGGCAGCGACGGCAGCCACGACAGCTGGGACGTGGAGCGCGTCGCCGAGTGGCCCTGGCTCTCCGGGACCATTCGAGCTGTCTCCCACACCGACGTTACCAAGAAAGATCTGAAGGTGTGTGTGGAATTTGATGGGGAATCTTGGAGGAAAAGAAGATGGATAGAAGTCTACAGTCTTCTAAGGAGAGCATTTTTAGTAGAACATAACTTGGTTTTAGCTGAACGAAAGTCACCTGAAATTTCTGAACGAATTGTACAGTGGCCTGCAATAATGTACAAACCTCTGTTGGACAAAGCTGGTTTGGGATCCATAACTTCTGTTCGCTTTCTGGGAGATCAACAAAGAGTATTTCTTTCTAAAGATGTTTTGAAGCCTATACAGGATGTAAACAGTCTTCGACTTTCTCTTACGGATAATCAGATTGTCAGCAAAGAATTTCAAGCTTTGATAGTGAAGCATTTAGATGAAAGCCATCTTTTAAAAGGTGACAAAAACTTAGTTGGTTCAGAAGTAAAAATTTATAGCTTGGACCCATCTACTCAGTGGTTTTCAGCAACCGTTGTAAGTGGAAACCCAGCATCAAAAACTCTTCAAGTCAACTGTGAGGAGATTCCAGCACTGAAAATTGTTGATCCATCACTGATTCATGTTGAAGTTGTACACGATAACCTTGTGACATGTGGTAATTCTGCAAGAATTGGAGCTGCAAAACGCAAGTCTTCTGAGAATAATGGAACCCTGGTTTCCAAACAAGCAAAATCTTGCTCTGAGGCCTCTCCCAGTATGTGTCCTGTACAGTCTGTACCTACAACAGTTTTTAAGGAGATACTGCTTGGCTGTACTGCAGCAACTCCACCTAGTAAGGACCCAAGACAGCAAAGTACTCCCCAGGCTGCCAACTCTCCACCTAACCTTGGAGCAAAAATTCCTCAAGGATGTCATAAACAGAGTTTGCCAGAGGAAATTTCTTCCTGTCTAAATACAAAGTCTGAAGCTCTGAGAACAAAACCAGATGTCTGCAAAGCAGGGTTGCTCTCAAAGTCCTCTCAGATTGGAACTGGAGACTTGAAAATTCTGAGTGAGCCAAAAGGCAGCTGTACTCAGCCTAAGACAAATACTGATCAGGAAAACAGATTGGAGTCTGTTCCACAACCATTGACTGGCCTTCCTAAGGAGTGCTTACCTACAAAGGCTTCTTCTAGGGCAGAAATGGAAATTGCCAATCCTCCTGTACGGCAGAAGCACCTAGAACATATACCTTCCCCATTGGATGTTTCTAATACACCAGAAGTGAAAGCAGGTGTCAATAGTGATAGCCCAAATAACTGTTCAGGAAAAAAGGTAGAACCTTCAGCTTTAGCTTGCCAATCACAGAATTTAAAGGAATCTTCAGTAAAAGTAGATAATGAAAGCTGTTGTACAAGAGGCAACAATAAAATCCAGAATGCCCCATCCAGGAAGTCGGTTCTGACAGACCCAGCTAAACTCAAAAAGCTGCAACAGAGTGGCGAGGCCTTCGTACAGGATGATTCTTGTGTGAACATTGTGGCACAGTTGCCTAAGTGCCGAGAGTGTCGCTTGGACAGTCTCCGCAAGGATAAGGAGCAACAGAAGGACTCACCTGTGTTTTGCCGCTTCTTTCACTTCAGGAGGTTACAATTCAACAAACATGGTGTGTTGCGGGTAGAAGGATTCTTAACACCAAACAAGTATGACAATGAAGCAATTGGCTTGTGGTTACCTTTAACCAAAAACGTTGTGGGGATTGATTTGGACACAGCAAAGTACATCTTGGCCAACATTGGAGACCACTTCTGTCAAATGGTGATTTCTGAAAAGGAAGCTATGTCAACTATTGAGCCACACAGACAGGTTGCTTGGAAGCGAGCTGTCAAAGGTGTTCGAGAAATGTGTGATGTGTGCGACACCACCATCTTCAACCTGCACTGGGTGTGTCCTCGGTGTGGGTTTGGAGTATGTGTGGATTGCTATCGGATGAAGAGAAAGAATTGCCAACAGGGTGCTGCTTACAAGACTTTCTCTTGGCTAAAATGCGTGAAGAGTCAGATACATGAACCAGAGAACTTAATGCCCACACAGATCATTCCTGGAAAAGCCCTGTATGATGTTGGAGACATTGTTCATTCTGTAAGAGCGAAATGGGGAATAAAGGCAAACTGCCCTTGTTCAAACAGGCAATTCAAACTCTTTTCAAAGCCAGCCTCAAAGGAAGACCTAAAACAGACTTCATTAGCTGGAGAAAAACCGACTCTTGGTACAGTGCTCCAGCAGAATCCCTCAGTGTTGGAGCCAGCAGCTGTGGATGGGGAAGCAGTCTCCAAGCCAGCCGGCAGCATGAAGCCTGCCTGTCCAGCCAGCACATCTCCTCTAAACTGGCTGGCAGACCTGACCAGTGGGAATGTCAACAAGGAAAACAAGGAAAAACAACCAACGATGCCAATTTTAAAGAATGAAATCAAATGCCTTCCACCCCTCCCGCCTTTAAGCAAATCCAGCACAGTCCTCCAAACGTTTAACAGCACAATTTTGACACCCGTAAGCAACAACAATTCTGGTTTCCTCCGGAATCTCTTGAATTCTTCTACAGGAAAGACAGAAAATGGACTCAAGAATACACCAAAAATCCTTGATGACATCTTTGCCTCTTTGGTGCAAAATAAGACTTCTTCCGATTTATCTAAGAGGCCTCAAGGACTGACGATcaagcctagcattctgggctttgacactcctcactattggctttgtgataatcgcttgctgtgcttgCAAGACCCCAACAATAAGAGCAACTGGAATGTGTTTAGGGAGTGCTGGAAACAAGGACAGCCAGTGATGGTGTCTGGAGTGCATCACAAATTGAACTCTGAACTTTGGAAACCTGAATCCTTCAGGAAAGAGTTTGGTGAGCAGGAAGTAGACCTAGTTAATTGTAGGACCAATGAAATCATCACAGGAGCCACAGTAGGAGACTTCTGGGATGGATTTGAAGACGTTCCAAATCGTTTGAAAAATGAAAAAGAACCAATGGTGTTGAAACTTAAGGACTGGCCACCAGGAGAAGATTTTAGAGATATGATGCCTTCCAGGTTTGATGATCTGATGGCCAACATTCCGCTGCCCGAGTACACAAGGCGAGATGGCAAACTGAACTTGGCCTCTAGGCTGCCCAACTACTTTGTTCGGCCAGATCTGGGTCCCAAGATGTATAATGCTTATGGATTAATCACTCCTGAAGATCGGAAATATGGAACAACAAATCTTCACTTAGATGTATCTGATGCAGCTAATGTCATGGTCTATGTGGGAATTCCCAAAGGACAGTGTGAGCAAGAAGAAGAAGTCCTTAAGACCATCCAAGATGGAGATTCTGACGAACTCACAATAAAGCGATTTATTGAAGGAAAAGAGAAGCCAGGAGCACTGTGGCACATATATGCTGCGAAGGACACGGAGAAGATAAGGGAATTTCTTAAAAAGGTGTCAGAAGAGCAAGGTCAAGAAAACCCAGCAGACCACGATCCTATTCATGATCAAAGCTGGTATTTAGACCGATCATTAAGAAAGCGTCTTCATCAAGAGTATGGAGTTCAAGGCTGGGCTATTGTGCAGTTTCTTGGGGATGTGGTGTTTATCCCGGCAGGAGCTCCACATCAGGTTCATAACTTGTATAGCTGCATCAAAGTGGCTGAAGATTTTGTTTCTCCAGAGCATGTTAAACACTGCTTCTGGCTTACTCAGGAATTCCGCTATCTGTCACAGACTCACACCAATCATGAAGATAAATTACAGGTGAAGAATGTTATCTACCATGCAGTGAAAGATGCAGTTGCTATGCTAAAGGCCAGTGAATCCAGTTTTGGCAAACCTTAATCTCCCTGCACATTGGAAGTGAATTACAGGCAGCTGTTCAAACTCTTCAGGCAGGATTCCTGTGGACTTTTGAGATTCATGTTACCTCATCTTCTTTTTTAAACTGTACCCAACTTGTGAGGGTACTCTGTCTAATGTATATTTCTAGTGTTTACAGACAGTTAATGTGTATATGTAGTAACTATTTACAGAACATGCATCCTTAAACTGTGACTTCTCACCTAGTGCAGAACTTTTACCAGGCTGTAAAAGCAAAACCTCATATCAGCTCTGGAACAATACCTGCAGTTATTCTCCAGCTGTTTGGACAATTTAGATTGGGTTTATAACTATTAGGAATCACTGCACAGTTTACTTGGGTTGTATTTTGTTTTGTGTCAGAGCCCCCTCTCCCTCATCCCTTAGGGTCCAGAAGAGCAATGGAGGAAGTGACAGCTAATGTTGCAGTTCTTATTGTATGGCATAGGATTGGCATTATATAGCAGAAATCAACTACTGTACAATTTCTTGGGGTTAACCATCTTTAGTTAAATGGAATTTTAATTTAAATGAAGCTTTGCTAATTTTAAGTGTTAAGCATTTTGCATTAAAATATTCATATTATAA

Publications

PMID - Link Title