Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL19P15
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr9:131363397-131364090  UCSC
Strand +
Parental Sequence XM_005584006.2
Parental seq. overlap 635 bp
Parental seq. overlap (%) 84%
Genomic Region Intergenic
Retrocopy Summary RPL19P15, located on chr9:131363397-131364090, is a retrocopy of the parental gene RPL19. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL19
Full Name N/A
Also known as QccE-18201
Coordinate chr16:50753685-50758900
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL19P30
Chimpanzee Pan troglodytes RPL19P14
Bonobo Pan paniscus RPL19P15
Gorilla Gorilla gorilla RPL19P14
Orangutan Pongo abelii RPL19P15
Gibbon Nomascus leucogenys RPL19P3
Green monkey Chlorocebus sabaeus RPL19P8
Rhesus Macaca mulatta RPL19P15
Baboon Papio anubis RPL19P17
Golden snub-nosed monkey Rhinopithecus roxellana RPL19P13
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL19P15
TGAGCTCTTTCCTTTCGCTGCTGCAGCCGCAGCCATGAGAATGCTCAGGCTTCAGAAGAGGCTCGCTGCTCGTGTCCTCCGCTGTGGGAAGAAGGTCTGGTTGGACCCCAAGGAGACCAATGAACTTGTCAATGCCAACTCCCGTCAGCAGATCCGGAAGCTGATCAAAGATGGGCTGATCATCCACAAGCCAGTGACTGTCCATTCCCGGCTCAAGGCCAGAAAAGCACCTTGGCCCGCCGGAAGGGCAAGCACATAGGCATTGGTAAGCCAAAGGGTACAGCCAATGCCCGAATGCCAAGAAGGTCACATGGATGAGGAGAATGAGGATCCTGTGCTGGCTGCTCAGGAGACACCGGGAATCGAGGAAGATTGAACACCACGTGGTTCACAGCCTGTACCTGAAGGAGCAGGGGAATGTGTTCACAAACAAGCGGATTCTCATGGAACACAGCCAGAAGCTGATGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCGAGCGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCTTCATGACTTTGTCCAAGGAGGAAGACACCAAGCAATAAAAGCTCCCCCTTTGTCTGTACATACTGGCCTCTGTGATTGCATAGATCAGCCATTAAAATAAAACAATCCTTTA
>XM_005584006.2
GAGGGGGTTGGGCTCTCCCCTTCTCAGATAATGGGAGGAGCCGGTCCCGAGCGAGCTCTTTCCTTTCGCTGCTGCGGCCGCAGCCATGAGTATGCTCAGGCTTCAGAAGAGGCTCGCCTCTAGTGTCCTCCGCTGTGGCAAGAAGAAGGTCTGGTTAGACCCCAATGAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCCGAAAGCTGATCAAAGATGGGCTGATCATCCGCAAGCCTGTGACGGTCCATTCCCGGGCGCGATGCCGGAAAAATACCTTGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGCGGAAGGGTACAGCCAATGCCCGAATGCCAGAGAAGGTCACGTGGATGAGGAGAATGAGGATTCTGCGCCGGCTGCTTAGAAGATACCGTGAGTCTAAGAAGATTGATCGCCACATGTATCACAGCCTATACCTGAAGGTGAAGGGGAATGTGTTCAAAAACAAGCGTATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCAAGACTTTGTCCAAGGAGGAAGAGACCAAGAAATAAAAGCTCCCCTCTTTGTCTGTACATACTGGCCTCCGTGACTACATAGATCAGCCATTAAAATAAAACAAGCCTTTATCTGC

Publications

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