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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC103228971P8
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr9:105865569-105865952  UCSC
Strand +
Parental Sequence XM_007986687.1
Parental seq. overlap 322 bp
Parental seq. overlap (%) 58.7%
Genomic Region Intragenic (TCF7L2)
Retrocopy Summary LOC103228971P8, located on chr9:105865569-105865952, is a retrocopy of the parental gene RPS15A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS15A
Full Name N/A
Also known as -
Coordinate chr5:17082307-17100719
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS15AP30
Chimpanzee Pan troglodytes RPS15AP27
Bonobo Pan paniscus RPS15AP27
Gorilla Gorilla gorilla RPS15AP28
Orangutan Pongo abelii RPS15AP24
Gibbon Nomascus leucogenys RPS15AP10
Crab-eating macaque Macaca fascicularis RPS15AP27
Rhesus Macaca mulatta RPS15AP28
Golden snub-nosed monkey Rhinopithecus roxellana RPS15AP30
Marmoset Callithrix jacchus RPS15AP48
Mouse lemur Microcebus murinus LOC105883773P3
Baboon Papio anubis Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC103228971P8
GTGAATGTCCTGGTGGATGCGCTCAAGAGCATCAACAATGCCGGAAAAAGAAGCAAACACCAGGTTCTTCATAGGTGGAGCTCCACAGTCGTCCAATTTCTAAGTGTGATGATGAAGCATGGGTGCATTGACGAATTTCAAATTATCGATCATCACGGAACAGGGAAGATTGTGATGAACCTCACAGGCAGGTTAAACAAGTGTGAAGTGGCCAGCTGTGGAGATGTGATGTGCAGCTCAAAGATCTAGAAAGATGGCAGAATCATCTGCTCCTATCCCAACAGCTGGCTTGCATGGTGCTGACCTCAGCTGGCATCATGGACCACAAAGAGAAAACACACAGGTGGAAAAAGCCTGGGATTCTTTTTCTAGGGATGTAATACA
>XM_007986687.1
TGTTTTTGCCGGTGCTTTGAAAGTCTCGCGATAGTTCTCCCGCTTCCCATAACTCCGTGCGCTCTCCCCTCCCGTTCCTTTTCCGCCATCTTTCCGCGCCGCCACCATGGTGCGCATGAATGTCCTGGCTGATGCTCTCAAGAGCATCAACAATGCCGAAAAGAGAGGCAAACGCCAGGTGCTTATTAGGCCGTGCTCCAAAGTCATCGTCCGGTTTCTCACTGTGATGATGAAGCATGGTTACATTGGCGAATTTGAAATCATTGATGATCACAGAGCTGGGAAAATTGTTGTGAACCTTACAGGCAGGCTAAACAAGTGTGGAGTGATCAGCCCCAGATTTGATGTGCAACTCAAAGATCTAGAAAAATGGCAGAATAACCTGCTTCCATCCCGCCAGTTTGGTTTCATTGTACTGACAACCTCAGCTGGCATCATGGACCATGAAGAAGCAAGACGAAAACACACAGGAGGGAAAATCCTGGGATTCTTTTTCTAGGGATGTAATACATACATTTACAAATAAAATGCCTCATGGACTCTGGTG

Publications

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