Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC103231026P1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr25). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr5:68578465-68578880  UCSC
Strand -
Parental Sequence XM_007990169.1
Parental seq. overlap 361 bp
Parental seq. overlap (%) 8%
Genomic Region Intragenic (CDH13)
Intragenic (ITSN2)
Retrocopy Summary LOC103231026P1, located on chr5:68578465-68578880, is a retrocopy of the parental gene LOC103231026. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC103231026
Full Name N/A
Also known as NULL
Coordinate chr25:27218795-27237977
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes LOC100615656P1
Bonobo Pan paniscus LOC100974692P1
Gorilla Gorilla gorilla LOC101153053P1
Gibbon Nomascus leucogenys LOC100585929P1
Baboon Papio anubis LOC103878724P1
Greater horseshoe bat Rhinolophus ferrumequinum RPS20P20
Human Homo sapiens Without Homology
Orangutan Pongo abelii Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC103231026P1
CTGCCCTTCCTGGCTACCGTGGGCCCAGTGCTGCTCCTGGGGCAAGAGCCAGAAGCCAGGCACACTGCTCAGTGACTCCAGCAAGGGTACGACCCAGCTGGGCACCTTCCTGGCCGTGGAGCAGCTGCAGCAGCAGGCAGGGTCTGAGTGTACTGTGGATCTCTTTGATGTGGCTCTGCTGCAGTCCCAGGCCTGTGGCCTTATGACCCCAACGCTGGAGCAGTATATCTACCTCCACCACTTTCTGAACAGCGTGCCGGCAGATGGGCTGCTCTGAGCCAGCACGGGTCACTGTTCAGTGTCAGACCAGGAGAGGTCTGTGCCCTGCTGGACAGGGACAGCCAGCTCTGGCAAGTCCACGTGGGCCTGGGCTCCCTGGAAGGGCAGCCTCCACTGGGCCCTGTGCTGTGAAGGGG
>XM_007990169.1
ATGAGGCCCCCAATCCTGTTTGCTGCCCTGCTCTGGCTCCGGGGTTTTTTGGCATGGGGGGCAGGCCAGTGGGAGGAAGCATGCCCCTCCCTGAAAAGGAGTCCAGGCAGGGAGAGTGCAGGCCCACCCCTGAATGTGAACATCACCAGCCAGGGGAGATCTATTAGCCTCTTTCTGAGTTGGGCAGCCCCGGAGCCAGGCGGGTTCATCCATGCCCTCTGCCTCACACGTCTGAGCCCCCTCAGCTCTCCTGAAGGGCAGCAGCTCCAGGCCCACACCAATGCATCCAGCTTTGAGTTCCAGGATCTGGTGCCAGGGAGTCGCTACCAGCTGGAAGTGACTGCCCTGCGACCCTGTGGGCAGAATGTCACTGTCACCCTCACTGCTCGCACTGCCCCGCCAACTGTCCATGGACTGCAGCTCCACAGCCCTGGGAGCCCATCCAGCCTGGAGGCCTCATGGGGTAAAGCCCCCGGGGAGCAGGATGGCTATCGCCTTCTCCTCTACCACCTGGAATCCCAGACATTGGCACATAATATCTCCATGCCCCCGGGCACCCTGTGCTACAATTTTGGAGACCTCTTGCCAGGTAGTGAGTATATTTTGGAAGTTAACACCTAGGCTAGCAACCTCCAAGCAAAAACCAGCCTCCATCAGTGGACAGGTAAGGTGGGCACTTGGGCAAGGCCCCAGGTGGCAGCCAATCTGGGAGTGGTGGGAATGGTGGAAAGTCCGGCGCCTCCTAGGCAGCCATGTCCCAATGTGCCTGGGCTTTTGTGCTCCCTAGTGCCAGGGTCCCTGCAAGCATCCTGCTCCAGGGGTCTTTCTTGTCCCCTGGCGCCACAGTTACTGGAGGTTATCAGCAGGGGCGGCCCCTCTGACCTGGCCTTTGACTGGGCCCCAGCACCAGGACAGCGGGAAGGCTACAGGCACATCTATTTCTCCCTTGTCCTTCCTCCAGTCCCTGCTCCTCCTGCCAACTTGAGCCCGAACCTTGCCATCCAGCCTCCTGCCCTGAGGGCTTCCTGGAGTCCCCCATCAGTGGGGAGGGAGGACTTCCAGGTGCAGCTTTATAGCCTAAGGCCTCTGACTCTAGAAAGGGAGGAGACTCTGGCTGCAGAGGTCCAGAACTTCTCCTGGGCCTAGCTGTCTCCGGGCACCGAGTTCCTGGTGCAGCTGGCCACCCTGCAGGGGCCGGATCAGAGCAGCAGCACCAACGCCACAGGCTGGACATGCCTGCTTGCCCCTCCTCTGGTAAATGTGACGAGTGAAGGTCCCACCCAGCTCTGGGCATCCTGGGTTCATGCCCCCAGGGGCCGAGACAGCTACCAGGTGACCCTGTACCAGGCAGGCACCCAGGCAAGCACCAGCGCTGTGGGAGCCAAGGTGGCTAGCACAAGCTTTTTGAGTCTGACTCCAGGCACAAAGTACGAGGTGGAGGTTGTCACGCAGGCTGGGCCCCTCCACACTGCAGCAGCCAACACCTCTGGCTGGACCCGTGAGGCATGGGGAAGGCAGAGATGCAGGAGAGCCCTTGCCCACCCAGTGAATTGTTGGTGTCCAGCCATGCAAGCACCACTGTGGTCAGCCTGGCCTGGGTCAGCGGCCCCTTGGGGGCACACAGTCTCGGAAGAAGAAGGGGATCCCAACTCTCAGAGTGCTGTGCCAGGCGGGGCCGCTGCAGGCGTCCACTCACCGCGTGGTGGTGCTTGTTGCTATGCCGACGTCAGCAGTGGAAGGATGAAGATGCCCGGAGATGCAGGTCCGATCCAGAGCCTTTTGATTCCCACAGAGCCTGGCCCTGTGGAGGATGTGCAGTGCCAGCCTGAGGCCACCTTCCTGGCCCTGAACTGGATGGTGCCTGCTGCGGACCGCCGCCTAGCATCTCCCAGCGTTAGCCCCACCCCTGAGCTGGAGCCTGGGACAGAAATGGGAGTGATGATCCCGCAGGGTATGTTTGGCAAGGATGACGGGCAGATCCAGTGGTATGGCATTATTGCCACCATCAACATGTCACTGCCTCAGCCTTCCGGGGAAACCATCAACCACACATGGCGTGACCACTACTACAGAGGACATGACTCCTACCTGGCCGTCCTGCTCCCAACCCCTTCACCCGGAGCCCTGCCGAGATCCTGGACAGTGCCTGTGGGTACAGAGGACTGTGGCCACACCAAAGAGATGTGCAATGGGCAGCTCAAGCCAGGTTCCCAGTATAGGGAGCACTTGCTGTCTGAATGTCTATTGCTCGTGACCCAGATTGCTGGGAGGGGCTTCACCTTATTTGCCTGCCCTTCCCCAGCAGAAGGTCCTGTTTCTCTGCCCAAGTTCAGCGTTGCAGCCTTTACCACGTGTGGCCCTCCTGAGACCCTTAACTCCTTCTCAGCCGTCTCAGAGCCCCAGGCCAGTATCTCCCCCGCAGCAGTGCCCCTGCCGGTAGTGGAGGGCCTCATGGTGGGCTGTGTCCTCACCATctgtgctgtgctgggcctgctgtgctggaggagggtgaaggggcagagGGCAGGGAAGAATCCGTTTTCCCAAGAGCTGACAGCTTACAACCTGTGGTGGACCCACTGGCCCATCCCTATCCACAGCTTCAGGCAGAGCTGGGAGGCCAAGAGTGCTCACGCGCACCAGGCTCTCTTTTTGGAATTCGAGGAGCTGAAGGAGGTGGGCAAGGAGCAGCCCACACTGGAGGCTGCTGGTGGTGCCAACACCACCAAGAACCATTACCCACATGTGCTACCCTATGACCACTCCAGGGTCAGGTTGACCTGGCTGGAGGGAGAGCCTCACTCTGACTACATCAACGCCAACTTCATCCCAGGCTACACCCATCACCCACAGGAATTCATTGTCCCTCAGGGGCCTCTCAAGAAAATGCTGGAGGACGTCTGGCGGTTAGTGTGGGAGCCGCAGGTCCGCATCGTCGTCGTGCTGACTGTCGGCATGAAGAACGGGAGGGTGAGGAAGGCGGGGCAGACTGGAGTGAGGCCAATCAGGCCTGGAAGGTGGTGGAACCACCTCCCACTCAGACCCAGGATGGGGTCCTCCCTGGGATGCGGAGGCAGTGGGAGGAACCAGGTGCTGTGTGAGCATTACTGGCCGGCAGACTCTACCCTGGTCATCTGTGGTCACATCACCATCCACCTCCTGGCCAAGAAGCCTGAGGATGAGTGGACCAAGCGGGAATTCCAGCTGCAGCACATGCATGCCCTGAGGATGAGCGGTTGCCCAGCAACAGCAGCAGAGGGTGAAGCAACTACGGTTCACCACCTGGCCCAACCACAGCATCCTCGAGGCCCCCAGCTACCTGCTCACCTACATGGAGCTGGTACAGGAGCAGGCAAGGGCCACCCAAGGCATGGGACCCATCCTGGTGCACTGCAGAGCCCGTACGTCTTCCTGCACAGCTGCCTACTGAACAAGATTCTGGAAGCGCCCTCCAACATCTCTGAGTCTTGGCCCATCTCTGTGATGAACTTCATGCAAGCATGTGCCAAGAGGGCCAATGCCAACGCTGGCTTCTTGAAGAAGTACGAGCTCCTGCTGCAGGCCATCAAGGACAAGGCTGGCTCTTCCACGCCCCCTCCTGGCTATGAGCAGGACAGCCCCATCTCCTATGACTGTTCTCAGGGACAGTTTTCTCTGGTGGAGGAGAGCCCCGATGACACACCCGAAGCTTGGCTTTTCCCTGGTGGGCCCTCTGGCCGTGACCACGTGGTGCTGACTGGCCCCATAGGGCCAGAGGAGCTCTGGAAGCTGGTGTGGCAGGACGGGGCTCATGTGCTTGTCTCTGGGTGCCCACCCGAGGCCACAGAGAAGCCACAGGAGTTCGGGCCAACGGAGATGCAGCCCATTGTCACAGACATGGTGACGGTGCACGGGGTGGCCGAGAGCAGCACAGCGGGCTGGCTCTGTACCCTCTTCAGGGTTACACAGGACAGCAGGAAGGAAAGGGAGGTGCAGAGACTGCAGTGTCCATACCTGGAACCTGGGTGTGAGCTGCCTGCCACCAACCTGCTGCCCTTCTTGGCTGCTGTGGGCCAGTGCTGCTCTCAGGGCAACAGCAAGAAGCCAGGCACACTGCTCAGCCGCTCCAGCAAGGGTGCAACCCAGCTGGGCACCTTCCTGGCCATGGAGCAGCTGCTGCAGCAGGCAGTGTCTGAGTGCACCGTGGATGTCTTTAACGTGGCCCTGCAGTGGTCTCAGGCCTGTAGCCTTATGACCCCAACGCTGTTGAGAGGCGACCAGAGGCAACGGGGCTGAGGAGCAGTATATCTACCTCTACAACTGTCTGAACAGCGCGCTGGCAGACGGGCTGCCCTGAGTTGGCACTGGTCACCGTGCAGTGTCAGAGCAGGAGAGGTTTGTGCCCTGCTGGATCGGGACAGCATTCCTGACATGTCCACGTGGGCCTGGGCTCCCTGAAAGGGCGGCCTCCACTGGGCCCTGTGCTGCGAAGGGACAGGGTCTCGGAATAAAGACATGTGGCCAGG

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