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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC103237165P4
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chrX:52620098-52620560  UCSC
Strand -
Parental Sequence XM_008001152.1
Parental seq. overlap 436 bp
Parental seq. overlap (%) 86.3%
Genomic Region Intergenic
Retrocopy Summary LOC103237165P4, located on chrX:52620098-52620560, is a retrocopy of the parental gene LOC103237165. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC103237165
Full Name N/A
Also known as -
Coordinate chr8:91194628-91199264
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UQCRBP1
Chimpanzee Pan troglodytes UQCRBP5
Bonobo Pan paniscus LOC100985683P5
Gorilla Gorilla gorilla LOC101127528P5
Orangutan Pongo abelii UQCRBP4
Crab-eating macaque Macaca fascicularis LOC102117303P3
Rhesus Macaca mulatta LOC701223P2
Baboon Papio anubis LOC100997829P2
Golden snub-nosed monkey Rhinopithecus roxellana LOC104671564P3
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC103237165P4
GTCAAAATGGCTGGCAAGCAGGCCATTTCAGCATCAGGCAAGTGGCTGAATCGTATTAAAAAATGGTATTACAATGCTGCAGGATTCAATAAACTGAGGTTAATGCGAGATGATACAATATATGAGGATGAAAACGTAAAACAAGCCATAAGAAGCCTTCCTGAGAACCTTTATAATGACAGGAAGTTTCACATTAAGAGGGCACTGGACCTGACCATGAAGCATCAGATCTTGCCTAAAGAGCAGTGGACCAAATATGAAGAGGAAAATTTCTACCTTGAACTGTATCTGAAAGAGGTTATTCGGGAAAGAAAAGAAAGAGAAGAATGGGCAAAGAAGTAATCAAGTAGTTGAAGTCTGTGGATGCAGCTGTTATGAAGATGGTTAAACCTGAAACAAACAATGTTAAGAATTATTTGGTCTGCAGATGTTTTACTTTAAATAAATGTCTATTGTAATGGCT
>XM_008001152.1
TGTCCTCTATGACTTACCCAGAAGGCAACGTTTCATTTTCTGGTCAAAATGGCTGGCAAGCAGGCGGTTTCAGCATCAGGCAAGTGGCTGGATGGTATTCGAAAATGGTATTACAATGCTGCAGGATTCAATAAACTGGGGTTATTGCGAGATGATACAATGTACGAGGATGAAGAGGTAAAAGAAGCCATAAGAAGGCTTCCTGATAACCTTTATAATGACAGGATGTTTCGAATTAAGAGGGCACTGGACCTGAACCTGAAGCATCAGATCTTGCCTAAAGAGCAGTGGACCAAATATGAAGAGGAAAATTTCTACCTTGAACCGTATCTGAAAGAGGTTATTCGGGAAAGAAAAGAAAGAGAAGAATGGGCAAAGAAGTAATCATGTAGTTGAAGTCTGTGAATGCAGCTGTTATGAAGATGGTTATACTTGAAACAAACAATTTTAAGAATTATTTGGTCTGCAGATGTTTTACTTTAAATAAATGTCTATTGTAATGGC

Publications

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