RCPedia: Rtcs

Summary

Retrocopy Name	RPL21P61	Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species	Macaca fascicularis
Coordinates	chr9:108963863-108964673 UCSC
Strand	+
Parental Sequence	XM_005585527.2
Parental seq. overlap	726 bp
Parental seq. overlap (%)	66.7%
Genomic Region	Intergenic
Retrocopy Summary	RPL21P61, located on chr9:108963863-108964673, is a retrocopy of the parental gene RPL21. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	RPL21
Full Name	N/A
Also known as	-
Coordinate	chr17:7085625-7099051
Strand	+
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	RPL21P91
Chimpanzee	Pan troglodytes	RPL21P58
Bonobo	Pan paniscus	RPL21P59
Gorilla	Gorilla gorilla	RPL21P74
Orangutan	Pongo abelii	RPL21P68
Gibbon	Nomascus leucogenys	RPL21P17
Green monkey	Chlorocebus sabaeus	RPL21P24
Rhesus	Macaca mulatta	RPL21P64
Cat	Felis catus	RPL21P6
Baboon	Papio anubis	Without Homology
Golden snub-nosed monkey	Rhinopithecus roxellana	Without Homology
Marmoset	Callithrix jacchus	Without Homology
Mouse lemur	Microcebus murinus	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Cow	Bos taurus	Without Homology
Sheep	Ovis aries	Without Homology
Dolphin	Tursiops truncatus	Without Homology
Horse	Equus caballus	Without Homology
Dog	Canis familiaris	Without Homology
Panda	Ailuropoda melanoleuca	Without Homology
Pale spear-nosed bat	Phyllostomus discolor	Without Homology
Velvety free-tailed bat	Molossus molossus	Without Homology
Greater mouse-eared bat	Myotis myotis	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Greater horseshoe bat	Rhinolophus ferrumequinum	Without Homology
Egyptian rousette	Rousettus aegyptiacus	Without Homology
Sloth	Choloepus didactylus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>RPL21P61
GCCTTTCAGCCAGAACTGCCATCTTCCAGTAATTTACCAAAATGACAAACACAAAGGGAAAGAGGAGAGGCACCCGATAGATGTTCTCTAGGCCTTTTAGAAAACATAGAGTTATTCCTTTAGCCATGTATATGCAAATCTGTAAGAAAAGTAATATTGTAGACATCAAGGGAATGAGCACTGTTCAAAACAAAATGTCCTGTAAGTGTTAACATGGCAAAACTGGAAGAGTCTACAATGTGACCCAGCATGTTGTTGGCATTGTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGTCAAGCGAATTAATGTGCATATTGAGCACATTAAGCACTCTAAGAGCTGAGATAGCCTCCTGAAATATGTGAAGGAAAATGATCAGAAAAAGAAGGAAGCCAAAGAGAAAGGTACCGGGGTTCAGCTGAAGTGCCAGCCTGCTCCACCCAGGGAAGCACACTTTGTGAGAACCAATGAGAAGCAGCCTGGGCTGCAGGAAACTCTTCCTTATGAATTCATGTATAGTAGGTGTTAAAAAATAAAATAAAAGACCTCTGGACTGCAGAAATGTTTCTCTTCATTGAGTAGAAGTGTGGTCCTCTCCCAAAGAAACATTTAAAGCAAATTTTAATTGTGTCCTAATTCATTTGTGTAATGTCTTTACTATTCAAATTTAATGTATTTCTTGCTGAAAGATGTGAGGTAGTTTATTGTGGAACAAATTACTCAATTGGTTGGAAAATGGCCAGATTGTATTTATGAAATACTTGTACTGCTTTAAAGATAGTCCCTCTAAATCATCATGGAAGAAAT

>XM_005585527.2
CGGGTCGTCGGCGTCCTGTTGGTCGTCCTTGAAGGCCCCTTTCCGGGCTGTCTGACACGATACAAGTGTCGGCTTGTGTTGGCCGGTGGTCTTTCTTTCGCAAGAAAGGAAAATATCCTCACAGACTTTCTGTGTTCTCAGAGACGATCTTCTTCCCTAGAAAGGAGTCGCTTTCGGTTGGCGTTTCCCTCAGGCAGCGCCGTGGGCAGCCCACAGGCCCTTGTAAGGCGCGCGCCGCGGCCCCGCCTCTTTCCTTTCGGCCGGAACCGCCATCTTCCAGTAATTTGCCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCGATATATGTTCTCTAGGCCTTTTAGAAAACATGGAGTTGTTCCTTTGGCCACGTATATGCGAATCTATAAGAAAGGTGATATCGTAGACATCAAGGGAATGGGTACCGTTCAAAAAGGAATGCCCCACAAGTGTTACCATGGCAAAACTGGGAGAGTCTACAACGTTACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGCCAAGAGAATTAATGTACGTATTGAGCACATTAAGCATTCTAAGAGCAGAGATAGCTTCCTGAAACGCGTGAAGGAAAATGATCAGAAAAAGAAAGAAGCCAAAGAGAAAGGTACCTGGGTTCAACTGAAGCGCCAGCCTGCTCCACCCAGAGAAGCACACTTTGTGAGAACCAATGGGAAGGAGCCTGAGCTGCTGGAACCTATTCCCTATGAATTCATGGCATAATAGGTGTTAAAAAAAAAAAAATAAAAGACCTCTGGGCTGAAAAATGTTTCTCTTCATTGAGTAGAAGTGTGGTGTCCTCTCCCCCAAAGAAATACTTAAAGCAAATTTTAGTTGTGTCCTAATTCATTATGTAATGTCTTTCCTATTCAAATTTAATGTATTCCTTGCTGAAGGATGTAAGGTAGCTTATTGTGCAACAGATTACTCAGTTGGTTAGAAAATGGCCAGGTATTATGTATGAAATATTTGTACTGGTTTGAAGATAGTCTTAAATCATCAAGGAAGaaataaagtaattttttttttca

>XM_005585527.2 

CGGGTCGTCGGCGTCCTGTTGGTCGTCCTTGAAGGCCCCTTTCCGGGCTGTCTGACACGATACAAGTGTCGGCTTGTGTTGGCCGGTGGTCTTTCTTTCGCAAGAAAGGAAAATATCCTCACAGACTTTCTGTGTTCTCAGAGACGATCTTCTTCCCTAGAAAGGAGTCGCTTTCGGTTGGCGTTTCCCTCAGGCAGCGCCGTGGGCAGCCCACAGGCCCTTGTAAGGCGCGCGCCGCGGCCCCGCCTCTTTCCTTTCGGCCGGAACCGCCATCTTCCAGTAATTTGCCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCGATATATGTTCTCTAGGCCTTTTAGAAAACATGGAGTTGTTCCTTTGGCCACGTATATGCGAATCTATAAGAAAGGTGATATCGTAGACATCAAGGGAATGGGTACCGTTCAAAAAGGAATGCCCCACAAGTGTTACCATGGCAAAACTGGGAGAGTCTACAACGTTACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGCCAAGAGAATTAATGTACGTATTGAGCACATTAAGCATTCTAAGAGCAGAGATAGCTTCCTGAAACGCGTGAAGGAAAATGATCAGAAAAAGAAAGAAGCCAAAGAGAAAGGTACCTGGGTTCAACTGAAGCGCCAGCCTGCTCCACCCAGAGAAGCACACTTTGTGAGAACCAATGGGAAGGAGCCTGAGCTGCTGGAACCTATTCCCTATGAATTCATGGCATAATAGGTGTTAAAAAAAAAAAAATAAAAGACCTCTGGGCTGAAAAATGTTTCTCTTCATTGAGTAGAAGTGTGGTGTCCTCTCCCCCAAAGAAATACTTAAAGCAAATTTTAGTTGTGTCCTAATTCATTATGTAATGTCTTTCCTATTCAAATTTAATGTATTCCTTGCTGAAGGATGTAAGGTAGCTTATTGTGCAACAGATTACTCAGTTGGTTAGAAAATGGCCAGGTATTATGTATGAAATATTTGTACTGGTTTGAAGATAGTCTTAAATCATCAAGGAAGaaataaagtaattttttttttca

Publications

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