Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NDUFA5P6
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr21). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr13:10725771-10726600  UCSC
Strand -
Parental Sequence XM_007982777.1
Parental seq. overlap 721 bp
Parental seq. overlap (%) 41.8%
Genomic Region Intragenic (C4orf45)
Retrocopy Summary NDUFA5P6, located on chr13:10725771-10726600, is a retrocopy of the parental gene NDUFA5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NDUFA5
Full Name N/A
Also known as -
Coordinate chr21:92330693-92348567
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NDUFA5P9
Chimpanzee Pan troglodytes NDUFA5P4
Bonobo Pan paniscus NDUFA5P4
Gorilla Gorilla gorilla NDUFA5P4
Orangutan Pongo abelii NDUFA5P5
Gibbon Nomascus leucogenys NDUFA5P4
Crab-eating macaque Macaca fascicularis NDUFA5P3
Rhesus Macaca mulatta NDUFA5P3
Baboon Papio anubis NDUFA5P4
Golden snub-nosed monkey Rhinopithecus roxellana NDUFA5P3
Marmoset Callithrix jacchus NDUFA5P7
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NDUFA5P6
TCCACATGAGAGGCTAAGAATACTGTACACAAAGATCCTTGATGTTCTTGAGCAAATCTCTAAAAATGCAGCATATAAAAAGTGTACAGAACAGATTACAAATGAGACGTTGGCTATGCTTAAAGTGGAACCAGATGTTAAAAAATTAGAAGACCAACTTCAAGGTGGCCAGATAGAAGAGGGGATTAATCAGGCTGAAAATGAACTGAGTCTGGTGAGAAAAATAATGCAGTGGAAACCAGGGGAGGCATTAGTGGAAGAGCCTCCTGCCAATCAGTGGAAACAGCCAATATAATTATTAAATGACTTTGGTGGGTTGAGGGAAATAGATGTAATTAAATATTCTGTTACATTAAGAGTGTGTTCATATTATTGATATTTTATAATCAAGAAAACTGATACAGAAAATACTTAGGAGACTCGTTAAAATGAATGATTATGGTAACATCATCTTGTGAGTCAATTTTTGATTTGTAAATTTTTCACACAAATTATTTCCAAGATGATATTTCTTTGAATAAAGAGGATGTGGGAAGATCTGAAAATTAGAAAAATTCCTACCGATCTTCAATGCAGAGACTATAATCAAAAAGTAGTTTCTTTAGTAGTATCTTCAATACACCATTTAATATTTTTATTATCCTAAAGAAGGAAAAGCCCTTAATTATTGTCTAAACAAATTTATAGATCACTGTTTGAAGTAAAGACAATGATTATTTTCAAACGTGAAAAGCAGCACAAGTGGCTGGAATAACAATTTGAAATTATGTTTAACCTCCTTGGCTGTGATCTTATGTATATAAAGCCAAATTTAAATATATAATTATATA
>XM_007982777.1
TGTTCTCAAAGGGCTGTGCGTCATCGACTCGTCGGCGCTGTCATGGCGGGTGTGCTGAAGAAGACCACTGGCCTTGTGGGATTGGCTGTGTGCACTACTCCACACGAGAGGCTAAGTGTATTGTACACAAAGATTCTTGATGTTCTTGCGGAAATCCCTAAAAATGCAGCATATAGAAAGTATACAGAACAGATTACAAATGAGAAGCTGGCTATGGTTAAAGCGGAACCAGATGTTAAAAAATTAGAAGACCAACTTCAAGGTGGTCAATTAGAAGAGGTGATTCTTCAGGCTGAACGTGAACTAATTCTGGCAAGAAAAATGAGGGACTGGAAACCATGGGAGCCATTAGTGGAAGAGCCTCCTGCCGATCAGTGGAAATGGCCAATATAATTATTAAGTGACTTTGATGTGTTGATGGGAAACTGATGTAATTAAATATACTGTTATATTAAGAGTGTTTTCATCTTACTGACATTTTATAATCAAGAAAAGTGATATAGAAAATATCTAGGAGACTGTTAAAATTGGTGATTATGGTAATACGGTCATGTGAATCCATTTTTGATTTATAAAGTATTCACACAAATTATTTCAAAGATGGTATTTCTATGAACAGAGAGGTCATGGGAAGATTTGAAAATTATTAAAGAAAAATTCCTACAGATCTTCAATGCAGAGACTATAATTAAAAGTAAAGTTTCTTCAGTATGTTCAACACATCATTTAATTTTTTTAAGTTATCCTGAAGAAGAAAAGGTCCTTAATATAGTCTAAACAAATTTATAGATCACTGTTTGAAGTAAATAATACGAGTGAGTATTTTCAAATGTGATAAAATGGCACAAGTGACTGGTGATAAAATTTGAAATTATGGTTAACCTCCTTAGCTGTGATCTTATGTATCTAAAATAAAACTTAAATATATAATTATATGTTGGATTACAAAATCtataatgtcattttattttagtcattattttttgaattatatcatttactctgttttcttatagtattaattttattatattttgttgttactatgttatattTGAAAACCATCAAATTCAAATACATTGTACAGTTGAAGAAATTGACTTAGTACTTAAAAGAAAGATTTCCCATTTCATAGAGGTTATTGGAGAAACTTTTCCTTTTGTTGCATTTGTGGAAGTTAGTTTTCTGGCCCGTGGCCTTTAATTTTCTTAATCAACCTACTTACATCAGGATAGAGGTAGAGTTTCTGTAAAAGAAGAGACATTAAGAGTTCCTGAAATTTGTATCTGGCATACGGATAGGCTTATATTCAAAACATCTTAGTCATGTGACTAAATTCAAAGTGGAATCACTAAATAGTTTGCAGTACATTTCTAATATAACTGTAGGTGGGTATCAAAACAAGACAAATGCTGTTCAGGGAAAGAAGCTGGCAAGCTTAAGGTTAAAAATAAAATTACATGTGTTTTCGCCTTTTCTTCCTAGCTCCCTGTCATTTCTAAATACTTGGTTAAATTTAACTTGGTATCTCTTTCCTTCATAGATAATATTATACTCTTGTGGGGTTTTGTGTGTACGTGTGTGTGTGCACGCGCACACGTGTACATTTGCTCAGAATGAGAAAAAACTGGTATTTTTCCTTCTTTCCAGTATATTTCTTCCCTCATAGAGCTGTAACATGAATACTAAATAAACATTAAATAAGATGGATTCTTAGA

Publications

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