Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NOP56P4
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr11:75104669-75105118  UCSC
Strand +
Parental Sequence XM_007962243.1
Parental seq. overlap 408 bp
Parental seq. overlap (%) 20.3%
Genomic Region Intragenic (LIMCH1)
Retrocopy Summary NOP56P4, located on chr11:75104669-75105118, is a retrocopy of the parental gene NOP56. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NOP56
Full Name N/A
Also known as -
Coordinate chr2:53882070-53887867
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NOP56P3
Chimpanzee Pan troglodytes NOP56P2
Bonobo Pan paniscus NOP56P2
Gorilla Gorilla gorilla NOP56P2
Orangutan Pongo abelii NOP56P2
Crab-eating macaque Macaca fascicularis NOP56P3
Rhesus Macaca mulatta NOP56P3
Baboon Papio anubis NOP56P3
Golden snub-nosed monkey Rhinopithecus roxellana NOP56P1
Marmoset Callithrix jacchus NOP56P5
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NOP56P4
GACAGCAGTACTACTGCAGAGAGGTGTGAGGAAACGAGTGAAAAACCCACAAAGAAGAAAAAGCAAAAGCCCCAGAAGGTTCCTCAGGAGAATGGAACAGAAGACCCATCTCTTTCTCCAAATCCACGAAAAAAGAAATCTTTTTCCAAGGAGGAGTTGATGAGTAGTGATCTTGAAGAGACTGCTGGCAACACCAGTCTTCTCAAGAGGAAGAAATCTTCACCCAAGGCGGAAACAGTTAATGATCCCTAAGATGCAGGCAACAGAAGTGCCTCCAAGAAAAAGAGGAAATTCTCCAAAGAGGAACCGGTTAGCAGTGGACCTGAGGAGGCTGCTGGCAGCAAGAGCAGCTCCAAGAAGAAGAAAAGGTTCCATAAAGAAGCCCAGGAAGTTCAGAATGCAAATAAACAGTCTCTGGGAGGCGGGGCATACCATAGCCCAAGGTGACAT
>XM_007962243.1
CCGGGAGATGGTGTCGTCCCCCGCCTCCGATTGGTCTGCGGGGCGGGGGCGTGGCCTCTGGAGCCTGGTTCCGCGCGCCAGAGCGCGCTAGCCGCATTGCGAGCCGAACCCGGGAGCAGGCGCCATGGTGCTGTTGCACGTGCTATTTGAGCATGCGGTCGGCTACGCGCTGCTGGCACTGAAGGAAGTGGAGGAGATCAGTCTGCTGCAGCCGCAGGTGGAGGAGTCCGTGCTCAACTTGGGCAAATTCCACAACATCGTTCGTCTGGTGGCCTTTTGTCCCTTTGCCTCGTCCCAGGTTGCCTTGGAAAATGCCAACGCCGTGTCTGAAGGGGTTGTTCATGAGGACCTCCGCCTGCTCTTGGAGACCCACCTGCCATCCAAAAAGAAGAAAGTACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCTGCAATACAGGAGGAGTTAGGGTACAACTGCCAGACTGGAGGCGTCATAGCTGAGATCCTGCGAGGAGTTCGTCTGCACTTCCACAATCTGGTGAAGGGTCTGACTGACCTGTCAGCTTGTAAAGCACAGCTGGGGCTGGGACACAGCTATTCCCGTGCCAAAGTTAAGTTTAATGTGAACCGAGTGGACAATATGATCATCCAATCCATTAGCCTCCTGGACCAGCTGGATAAGGACATCAATACCTTCTCGATGCGTGTCAGGGAGTGGTATGGGTATCACTTTCCGGAGCTGGTGAAGATCATCAATGACAATGCCACATACTGCCGTCTTGCCCAGTTTATTGGAAACCGAAGGGAACTGAATGAGGAAAAGCTGGAGAAGCTGGAGGAGCTGACAATGGATGGGGCCAAGGCTAAGGCTATTCTGGATGCCTCACGGTCCTCCATGGGCATGGACATATCTGCCATTGACTTGATAAACATCGAGAGCTTCTCCAGTCGTGTGGTGTCTTTATCTGAGTACCGCCAGAGCCTACACACTTACCTGCGCTCCAAGATGAGCCAAGTAGCCCCCAGCCTGTCAGCCCTAATTGGGGAAGCGGTAGGCGCACGTCTCATCGCACATGCTGGCAGCCTCACCAACCTGGCCAAGTATCCAGCATCCACAGTGCAGATCCTTGGGGCTGAAAAGGCCCTGTTCAGAGCCCTGAAGACAAGGGGTAACACACCAAAATATGGACTCATTTTCCACTCCACCTTCATTGGCCGAGCAGCTGCCAAGAACAAAGGCCGCATCTCCCGATACCTGGCAAACAAATGCAGTATTGCCTCACGAATCGATTGCTTCTCTGAGGTGCCCACGAGTGTATTTGGGGAGAAGCTTCGAGAACAAGTTGAAGAGCGACTGTCCTTCTATGAGACTGGAGAGATACCACGAAAGAATCTGGATGTCATGAAGGAAGCAATGGTTCAGGCAGAGGAAGCGGCTGCTGAGATTACTAGGAAGCTGGAGAAACAGGAGAAGAAACGCTTAAAGAAGGAAAAGAAACGGCTGGCTGCACTTGCCCTCGCATCTTCAGAAAACAGCAGTAGTACTCCAGAGGAGTGTGAGGAGACGAGTGAAAAACCCAAAAAGAAGAAAAAGCAAAAGCCCCAGGAGGTTCCTCAGGAGAATGGAATGGAAGACCCATCTATCCCTTTCTCCAAACCCAAGAAAAAGAAATCTTTTTCCAAGGAGGAGTTGATGAGTAGTGATCTTGAAGAGACCGCTGGCAGCACCAGTCTTCCCAAGAGGAAGAAGTCTTCACCCAAGGAGGAAACAGTTAATGAGCCCGAAGAGGCAGGCCACAGAAGTGGCTCCAAGAAAAAGAGGAAATTCTCCAAAGAGGAGCCAGTCAGCAGTGGGCCTGAAGAGGCAGCTGGCAAGAGCAGCTCCAAGAAGAAGAAAAAGTTCCATAAAGCATCCCAGGAAGATTAGAATGCAAATGGACATTCTCTGGGAGGTGGGACATACCATAGCCCAAGGTGACATCTTCCACCCTGTGCCCTGTTCCCCAATAAAAACAAATTCACAAAA

Publications

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