Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name PHF5AP1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr6:18042881-18043710  UCSC
Strand -
Parental Sequence XM_007975914.1
Parental seq. overlap 752 bp
Parental seq. overlap (%) 58.5%
Genomic Region Intragenic (PBX4)
Retrocopy Summary PHF5AP1, located on chr6:18042881-18043710, is a retrocopy of the parental gene PHF5A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PHF5A
Full Name N/A
Also known as -
Coordinate chr19:23998277-24008504
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PHF5CP
Chimpanzee Pan troglodytes PHF5AP6
Bonobo Pan paniscus PHF5AP6
Gorilla Gorilla gorilla PHF5AP5
Orangutan Pongo abelii PHF5AP4
Gibbon Nomascus leucogenys PHF5AP3
Crab-eating macaque Macaca fascicularis PHF5AP4
Rhesus Macaca mulatta PHF5AP5
Baboon Papio anubis PHF5AP5
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PHF5AP1
GGTGGCCACCTTAGTTGGGAACTATGGCTAAACATTGTCCTGATTTGATCTTTTGCCGCAAGCAGGCTGGTGTTGCTATCAGAAGACTGTGGGAAAAATGTGATGGCAAGTGTGTGATTTGTGACTCCTATGTGCGTCCCTGCACTCTGGTGCGCCTATGTGATGAGTGTAACTGTGGATCTTACCAGGGGCGTTGTGTGATCTGTGGAGGCCCTGGGGTCTCTGTTGCCTATTATTGTAAGGAATGCACCATCCTGGAGAAGAATAGGGATGGCTGCCCAAAGATTGTCTATTTGGGGAGCTCTAAGACCTCTTCTATGAATACAAAAAATACGGCTTCAAGAACAGGTGATTGGTGAGTGACCTCTTCCTCCCCGCCACCCCACATCAAGCTGCTGCAGCTGCCCGAAAAGATGCCTACTATTACCATCAGAAAGGGAGCAGAGCCCAGAGCATCACCAGGAGTGCCTGCTAGTGTACTGGCAGCTTGCCACCCCATCCTCTCCCTTCACCCAGACATGTAGTAGGGATGGAAAAGGATTCTTAGAGCACTTTGGCACACCGTATCAGATAAAAATTGATAGATTAATTAATGGTTTTTCTTGAATTCAAGAAGCAAAGATCTGTTCTCCATATTGATATGTTCTCCCTCAACCAAGATCTTCTAAAAAGAAATGATATTTTAGCCTTCTGGTTGAGTAGTTGACTGTGAAACTACACCCAGTGAAAAACATGTTCTTGCAGCAACTCTGGTGGCAGCTGTCCTTGAGGAACCTTCGATGTGTGGTGGGAAGCTATCAGAACGAGAAATGTAGGCAt
>XM_007975914.1
AGTAATGAACAGACACGCAAGAGGAAATAGAACTGCCTAAAGACACTTGCAGAAGTAGATACCAAGCACAAATATGTTTTATCCAAGAACAAACTTTAGTTATCTCTGCCATCCAAATCTAGGAGTGTTTTAAGACTTTCATGCACCTGCCAGGACCTGGCCACCCAGCGGCGACAGAAACTCGCGCGAGAGCAAGAGGGGCCTGGTGCAAGGATCGTAAACTGACGGAAGCTTAGAGGACCAATCACAGCGACGTGGAGGCAGGAACAATGGGAAATAAAGGTCGGACGGAAGTTCCCGAAGCTTCCGGTGGCCGGCTTAATTGGGAGCTATGGCTAAACATCATCCTGATTTGATCTTTTGCCGCAAGCAGGCTGGTGTTGCCATCGGAAGACTGTGTGAAAAATGTGATGGCAAGTGTGTGATTTGTGACTCCTATGTGCGTCCCTGCACTCTGGTGCGCATATGTGATGAGTGTAACTATGGATCTTACCAGGGACGCTGTGTGATCTGTGGAGGCCCTGGGGTCTCTGATGCATATTATTGTAAGGAGTGCACCATCCAGGAGAAGGATAGAGATGGCTGCCCAAAGATTGTCAATCTGGGGAGCTCTAAAACAGACCTCTTCTATGAACGCAAAAAATACGGCTTCAAGAAGAGGTGATTGGTGGGTGGCCCCTTCCTCCCCCCAACATCAAGCTGCTGCAGCTGCCAGAAAACATGCCTACTACTACCAGCAGAAAGGGAGCAGAGACCATAGCATCACCAGGAGTGCCTGCTAGTGTACTGGCAGCTTGCCACCCCCTCCTCTTCCTTCACCCAGACGTGGTAGGGATGGAAAAGGATTCTTCACAGAGCACTCTGGCACACCGTATCAGAGAAAAGTTGGTAGATTAGTTAATGATTTTTCTTGAATTCGAGAAGCAGAGATCTGTTCTCCATATTGATATGTTCTCCCTCAACCAAGATCTTCTAAAAAGAAGTAATATTTTAGTCTTCTGCTTGAGGAGTTGGCTGTGAAGCTACAGCCGGTGAAAACCATGTTCTTGCAGCAGCTCTGGTGGCAGCTGTCCTTGAGGAACTTTTGGTGTGTGGTGGGAAGCTATCAGAACAAGAAATGTAGGCATTTACTGTTTTGGGGGGAGAGGGAGGGGCGCTCCGCCATCTTGAAAGGCATTTATTCGTTTAACACTTGTGCCCGTGTCATGTTATTTTCCTTTTGAGAAATTGGGAACTCTGTTGCTATTATGTTAATAAAGTTGGTGTTTATTTTCTGGTA

Publications

PMID - Link Title