Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PRKRIRP3
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr9:78745215-78749370  UCSC
Strand -
Parental Sequence XM_008020198.1
Parental seq. overlap 2586 bp
Parental seq. overlap (%) 73.8%
Genomic Region Intergenic
Retrocopy Summary PRKRIRP3, located on chr9:78745215-78749370, is a retrocopy of the parental gene THAP12. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name THAP12
Full Name N/A
Also known as -
Coordinate chr1:67563002-67595280
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens THAP12P3
Chimpanzee Pan troglodytes THAP12P6
Bonobo Pan paniscus THAP12P7
Gorilla Gorilla gorilla THAP12P6
Orangutan Pongo abelii THAP12P4
Gibbon Nomascus leucogenys THAP12P1
Crab-eating macaque Macaca fascicularis PRKRIRP3
Rhesus Macaca mulatta THAP12P3
Baboon Papio anubis THAP12P4
Golden snub-nosed monkey Rhinopithecus roxellana THAP12P8
Marmoset Callithrix jacchus THAP12P5
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PRKRIRP3
GATGCGGAACTTCTGCGCTGCCCCTAACCGCGGGCAGAAGAGCAGGCAGTCCGACCTGGCCTTCTTCATGTTCCCGCGGGACCCGGCCAGATGCCGGAAGTGGGTGAAGAATTGAAGGAGAGCAGATTTAGAAGATAAAACACCtTAAAAAAACACCTATTCAGCTAAATAAACATTATCAATTATGTGCCAAACATTTTGAGACCTCTAGGATCTGTAGAACTATATACAGTCCTTACAGGACAGTTCTTCTAGATAATGAAATACCAACAATATTTGATCTTACCAGTCATTTGAGCAACACACAGAGTAGACACAGAAAACGAATAAAATAACTGAGTGAAGAAGAAATCAGGACACTGAAACAGAAAAAAATTGATAAAACTTCTGAACAGGAAGAAAAACATAAAAAAATCAACAATAGCAATGCTCAGAACCCCAGTGAAGAAGGGGGTGAAGGACAAGATGAGGATATTTTACCTCTAACCCTTGAAGAGAAGGAAAACAGAGAATAACTAAAATCTCTGTTTGAAATCTTGATTCTGATGGGAAAGCAAAACATACCTCTGGATGGATATGAGGCTGATGAAATCCCAGAAGATCTCTTTACTCCAGATAACTTTCAAGCACTGCTGGAGTGTCAGATAAATTCTGGTGAAGAGTTTCTGAGAAAATGGTTTGAGACAACAGCAGTTAACACGTTGTTTTGTTCAAAAACACAGTAGAAACAGATGCTAGAGATCTATGAGAGCCGTATTCAAGAAGAAACTCTCAGGGAAGTGAGAGACTCACACTTCTTTTCCATTATCACTGATGATGTAGTGGACATAACAAGGGAAGAGCACCTACCTACCTGTGTTGGTGAGGTTTGTTGATGAATCTCATAACCTAAGAGAAGAATTTGTAGGCTTCCTGCCTTACGAAGCTGATGCAGAAATTTTGGCTGTGAAATTTCACACTGTGATAACTGAGAAGTGGGGATGAAATATGGAGTATTGTCGTGGCCAGGCTTACATTGTATCTATTGGATTTTCTTCCAAAATGAAAGTTGTTGCTTCTAGACTTTCAGAGAAATATCCCCAAGCTATTTACATGCTCTACTCTTCCTGTGCCATAAATATGTGGTTGGCAAAATCAGTACCTGTTATGGGAGTATCTGTTGCTTTAAGAATAAGTGAGGAAGTTTGTTCTTTTCTCCATGGATCGCCACGACTGCTTTTAGAACTTGACAATGTAATTTCTGTCCTTTTTCAGAACGGTAAAGAAAGGGGTAAAGAAGTGAAGGAAATCTGCATTCTCCATTAACAGGCAGGCATGATGCTTTTGAAATTTTAGTGGAACTCCAGCAAGCACTTGTTTTATGTTTAGAGAGTACAAATAGTGACACAAATATTAGATGGAATAACTGTATAGCTGGCCGCGCATTTGTACTCTGCAGTGCAGTAACAGATTTTGATTTCATTGTTACTACTCTTGTTCTTAAAAATGGCCTTTTACAAGAGCCTTTGGGAAAAATCTCCAGGGTCAAACCTCTGATGTCTTATTTGCAGCCGGTAGCTTGACTGCAGTACTGCGTTCACTCAATGGAGTGATGGAAAATATTGAAGTTTATCATGAATTTTGGTTTGAAGAAGCCACAGATTTGGCAACCAAATGATCTTCAAATGAAACTCCCTGGGAAATTCCGCAGAGCTCACCAGGGTAACTTGGAATCCCAGTTAACCTCTGAGATTTACTATAAAGAAACCCTAAGTGTCCCAACAGTGGAGCACAGGAACTTAAAGATATATTCTCAGAACAGCACCTCAAAGCTCTTAAATGCTTATCTCTGGTACCCGCAGTCATGGGACAACTCAAATTCAATACCTAGGAGGAACACCATGCTGACATGTTGTAGAAGTGGCTTACCCAATCCCGACACGCTCTCAGTCAAGCTTCATTGTTGGAGAATCAAATGGAAACACAGGGGGAAAGATATAGAGCTTCCATCCACCATCTATGAAGCCCTCCATCTGCCTGACATCAAGTTTTTTCCTAATGTGTATGCATTGCTGAAGGTCTTGTGTATTTGTCCTGTGATGAAAGTTGAGAATGAGTGGTATGAAAATGGACGAAAGCATCTTAAAGCATATTTGAAGTACACTTTGACAGACCAAAGGTCAAGTAACTTGGCTTCGCTTAACATAAAATTTGATATAAAACATGACCTGGATTTAATGGTGGACACATATATTAAACTCTATATAAGTAAGTCAGAGTTTCTCACAGATAATTTGGAAACCATGGAAAGTATCTAAGAGACTTTTAAGAATAGACCAAAAAATAGGCTTTCTTATATTTGATATTTGGAAGTAAAGCAGTAAGGTGTATGTAGGCCACTTAATCACTAAATATCTTTGCCTATAGGTCTCCCTTGAATGCATTAGCTATTGATAATCTACCTGCTTAAATGGCCCCTGTTTGAACTCTCATGCTTTGAGGACCTATCTGTTCTTCCAGAAGAGAACATTGAAAGTGCCAAGTTTCCTTCTGCATGATCTCTGCTGGTGGCACTCTGGAACTGTTTTAATTAAGTCATCTCAGACATAGCATTTATTATCACTGTGGATCTCTACTCGTTTGGTACTAATAAATTCTTTGAAGAAATATATTTTGAAGAGGTGTGGGAGGAAGGAATACATTTTATAAAATATTATAGTGAAGCCCTCACTTGACCTTTGATTAATAGGGATTTTAAGTATGTTAAAAGTCTATACTGGATAGTTACAAGAAATTGCCAGAGAAAGAGAAGCTAGTGAGCTCGCCAAACAAGGATTTCAA
>XM_008020198.1
cggccggccggccTGGCTCCCCTCCTCGGCCCCGAcgggcgggcggactgccctgaggaggcggggaggggagggctgggccggccggcgggcgggcgACGATGCCGAACTTCTGCGCTGCCCCCAACTGCACGCGGAAGAGCACGCAGTCCGACTTGGCCTTCTTCAGGTTCCCGCGGGACCCGGCCAGATGCCAGAAGTGGGTGGAGAACTGTAGGAGAGCAGACTTAGAAGATAAAACACCTGATCAGCTAAATAAACATTATCGATTATGTGCCAAACATTTTGAGACCTCTATGATCTGTAGAACTAGTCCTTATAGGACAGTTCTTCGAGATAATGCAATACCAACAATATTTGATCTTACCAGTCATTTGAACAACCCACATAGTAGACACAGAAAACGAATAAAAGAACTGAGTGAAGACGAAATCAGGACACTGAAACAGAAAAAAATTGATGAAACTTCTGAGCAGGAACAAAAACATAAAGAAACCAACAATAGCAATGCTCAGAACCCCAGTGAAGAAGAGGGTGAAGGGCAAGATGAGGACATTTTACCTCTAACCCTTGAAGAGAAGGAAAACAAAGAATACCTAAAATCTCTATTTGAAATATTGATTCTGATGGGAAAGCAAAACATACCTCTGGATGGACATGAGGCTGATGAAATCCCAGAAGGTCTCTTTACTCCAGATAACTTTCAGGCACTGCTAGAGTGTAGGATAAATTCTGGTGAAGAGGTTCTGAGAAAGCGGTTTGAGACAACAGCAGTTAACACGTTGTTTTGTTCGAAAACACAGCAGAGGCAGATGCTAGAGATCTGTGAGAGCTGTATTCGAGAAGAAACTCTCAGGGAAGTGAGAGACTCACACTTCTTTTCCATTATCACTGATGATGTAGTGGACATAGCAGGGGAAGAGCACCTACCTGTGTTGGTTAGGTTTGTTGATGAATCTCATAACCTAAGAGAGGAATTTATAGGCTTCCTGCCTTATGAAGCTGATGCAGAAATTTTGGCTGTGAAATTTCACACTATGATAACTGAGAAGTGGGGATTAAATATGGAGTATTGTCGTGGCCAGGCTTACATTGTGTCTAGTGGATTTTCTTCCAAAATGAAAGTTGTTGCTTCTAGACTTTTAGAGAAATATCCCCAGGCTATCTACACACTCTGCTCTTCCTGTGCCTTAAATACGTGGTTGGCAAAATCAGTACCTGTTATGGGAGTATCTGTTGCGTTAGGAACAATTGAGGAAGTTTGTTCTTTTTTCCATCGATCACCACAACTGCTTTTAGAACTTGACAACGTAATTTCTGTTCTTTTTCAGAACAGTAAAGAAAGGGGTAAAGAACTGAAGGAAATCTGCCATTCTCACTGGACAGGCAGGCATGATGCTTTTGAAATTTTAGTGGAACTCCTGCAAGCACTTGTTTTATGTTTAGATGGTATAAATAGTGACACAAATGTTAGATGGAATAACTGTATAGCTGGCCGAGCATTTGTACTCTGCAGTGCAGTAACAGATTTTGATTTCATTGTTACTATTGTTGTTCTTAAAAATGTCCTATCTTTTACAAGAGCCTTTGGGAAAAATCTCCAGGGGCAAACTTCTGATGTCTTCTTTGCAGCTGGTAGCTTGACTGCAGTACTGCATTCACTCAATGAAGTGATGGAAAATATTGAAGTTTATCATGAATTTTGGTTTGAGGAAGCCACAAATTTGGCAACCAAACTTGATATTCAAATGAAACTCCCTGGGAAATTCCGCAGAGCTCACCAGGGTAACTTGGAATCTCAGCTAACCTCTGAGAGTTACTATAAAGAAACCCTAAGTGTCCCAACAGTGGAGCACATTATTCAGGAACTTAAAGATATATTCTCAGAACAGCACCTCAAAGCTCTTAAATGCTTGTCTCTGGTACCCTCAGTCATGGGACAACTCAAATTCAATACGTCAGAGGAACACCATGCTGACATGTATAGAAGTGACTTACCCAATCCTGACACGCTCTCAGCCGAGCTTCATTGTTGGAGAATCAAATGGAAACACAGGGGGAAAGATATAGAGCTTCCATCCACCATCTATGAAGCCCTCCACCTGCCTGACATCAAGTTTTTTCCTAATGTGTATGCATTGCTGAAGGTCCTGTGTATTCTTCCTGTGATGAAGGTTGAGAATGAGCGATATGAAAATGGACGAAAGCGTCTTAAAGCATATTTGAGGAACACTTTGACAGACCAAAGGTCGAGTAACTTGGCTTTGCTTAACATAAATTTTGATATAAAACACGACCTGGATTTAATGGTGGACACATATATTAAACTCTATACAAGTAAGTCAGAGCTTCCCACAGATAATTCTGAAACTGTGGAAAATACCTAAGGGACTTTTAAAAACAGGCTTTCTTATATTTGATACTTGGAAGAAAAGCCGTAAGGTGTATGTAGGCCACTTAATCACTAAATATCTTTGCCTATAGGACTCCATTGAATACATTAGCCATTGGTAATCTACCTGTTTAAATGGCCCCTGTTTTTGAACTCTCATGCTTTGAAGACCTACCTGTCCTTCCAGAAGAGAACATTGAAAGTGCCATGTTTCCTTCTGTGTGATCTCTGTTGACGGCACTCTGGAATTGTTTTAGTTAAGTCATTTTAGACATAACATTTATTATCACTGTGGATCTCTACTTGTTGGGTGTTATGAATTCTTTGAAGAAATATATTTTGAAGAGGTGTGGGAGGAAGGAATACATTTTATAAAATGGTATAGTGAAGCCCACAATTGATCTTTGACTAATACGAGTTTTAAATGTGCTAAAAATCTATACTGAACAGTTACAAGAAATTACTGGAGAAAAGCTTGCGAGCTCACCAAACAAGGATTTCAGTGTAGATTTTGTCTTTCTCGAACTTAAAGGAACAAATGACAAAGTTTGAATGGAAAGGCCTGCTGTTGTTCCACATCTCATTGTTGCTGTTTACATTCCTTTCTGGAGCCTACATCTTCCTAAGCTTTTTAGCAGGTATATGTTGAACACTTCTGTTTCATGGTTGAGACAGAATCAGAGGCCATGGATACTGACAACTGATTTGTCTGTTTTTTTTTCTGTCTTTTTCCATGACTCTTATCTACTGCCTCATCTTGATTTATAAGCAAAACCTGGAAAACCTACAAAAATAAGTGTTGTGGTTTATCTAGAAAAATATGGAAAATATTGCTGTTATTTTTGGTGAAGAAAATCAATTTTGTATAGTTTATTTCAATCTAAATAAAATGTGAATTTTGTTTAAAGCTTAGGCACATTATTTTTGGTGGGGTCAAAACATTCTTGTGTAAATTCTCTTTAAAAACTTTTGATAAACTGCTTCACAATTCAGGATGAGTCTTTTGTATGTGGTTTACTAATTGGGTTATAGAAAAAAACAAGAAAGTATTAAATGTAAGGTTCACCCAA

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