Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PRR3P1
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Plot displaying the genomic locations of a retrocopy (in chr22) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr22:49450349-49452147  UCSC
Strand -
Parental Sequence XM_007973246.1
Parental seq. overlap 1505 bp
Parental seq. overlap (%) 61.1%
Genomic Region Intragenic (ARHGEF28)
Retrocopy Summary PRR3P1, located on chr22:49450349-49452147, is a retrocopy of the parental gene PRR3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PRR3
Full Name N/A
Also known as -
Coordinate chr17:41892924-41900021
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PRR3P1
Chimpanzee Pan troglodytes PRR3P1
Bonobo Pan paniscus PRR3P1
Gorilla Gorilla gorilla PRR3P1
Orangutan Pongo abelii PRR3P1
Gibbon Nomascus leucogenys PRR3P1
Rhesus Macaca mulatta PRR3P1
Baboon Papio anubis PRR3P1
Golden snub-nosed monkey Rhinopithecus roxellana PRR3P1
Marmoset Callithrix jacchus PRR3P1
Crab-eating macaque Macaca fascicularis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PRR3P1
CCAAATCCCCCTGCAACCTTTGCTGCCGCCATAATGCCGAAACGAAaCCCCACTGCCCAAGTAGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCTATCGGACCACCCCGCCTTCTGAGCCTCCCACTATGGTCAGTCGAAAACCTGATGACCCTAAGTCAGCTCCTCACCGAGGTCCTCCAGGAGCAAAGGGATCGCTGATTCCACCGCTGCTGAGCCTCCCACCTCCCCCTCAGGGTAGAGGCCCAAGACCAGGAGGCTTTGGCCCCAGGCCTAGCCCATATAGTTGTGGTTGGTGGGGAGTCAATGCTGAACCTCCTTTTCCAGGGCCAGGCCACAGGGGTCCCGCCAGGCGAAGCCTTCACAAAGCACAGAGAAACCCTCCAAGCCTCCAAGTGTCTTATCAAGAATACCTGCCCACTAGGATAACCCCTAGGTTATGGAAGACAAATCCCACCGCCCAGTCTGTGGACATTTTGCCAAAAGGGGCCACTGTCGGTATGAGGACCTCTGTGCCTTCTACCACCCAGGTGTCAATAGCCCTCCACTGTGAGACTGTGTCCTCCCATCCACGGTGGAAGGAGCCGTCTGTGACCAGCGGCCATGTATTTCCCTGCGGCCCTGTGATGGCTACTGTGAGGCTCTTCCAGCATGCCCAGCCAGTGACACACCCACCCTATCCACCCCTTCCCCTGTGTGGGGTCCAGAGTTGTGTTGCATCACGGGGGCAAGGTGTGCGCACTTTCTTCTGATGCAGCCTCTAGAGACTTCCCTTTGGGACCAATCCTTGCTCCCTTCAGCTGCCTCCTGGATCTTCCACTCATCAAATGACTGCTGAACAGAAAACTTCTTTGGGACTGTTTCTGTCCACATGTTCCCAGAATTGCCCTCCATTCCTGAGAGCCCTGGAGCAGCTTCCTACTCTTCCCTTCTTCTAGCTGCTTGTTTTAAGTCCTATTCATGTGACACCACTTACCCCCAGTGTTATCAGCTGCTCATGGAACTCAGACAGGTTGTTTAACCTGGGGTCAAGTTTGAGTGACTGATACAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCTTTTGGATTTCATAGTTTCTCTGTCAGTAGCACGATCCCCACTGCTACAGCCTGTGATCACTGTGCTTTGTGAAACTCTGCATCCCCTCACAGCCTTTCTCGGTGTCTGTGGCATGTCTGTGATTTCCCAACACCAGAGTAAGTTTTTCTGCCACAATGAGTAAGGCTGTTGGTGCCCTCTAGACTTTCCACCTCCCCACATTGGGGAATTGTGACCTCTCCAATGGACTGCCTCCCTGGTCCTCCCCATTCTTCCCATTCTTCTCTTGGTGTTGGTCATTCTGGGTCTGATACAGGCCCATGAGATGTCTTGTAAAGCCTCAGATGGATTTACCCTACCTAGATCCTTTCCAGCCCATTTTAGTTAGACTATGTCATTGGGAGGCCACCAGTCCCTTCATTTGAATTCTGTGAATCTCCACCTTGCTTATATTTGGGTGGAACCTGGAAAGTACTGTCGCCCTCTTCCAACCCTCTTCCCCTACATCCCTGGCACTGATTGTTTTCTGTGAAAATGGCAGAGAACAGGTTCAGTTTTGAACTGGCTCTGAGGAAATGGGTCAGGAGTTGAATGGGCAAGAGGGAGGGATGAGAGCTGTTGGAGAACTGAGAATGAGGATATTAGTAATAAATGCAGTGG
>XM_007973246.1
AAAGCCGAGACTGTGCGTCCCGGGAATGAAGCCAGGTTGCTGGGCTACACCAGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTGAAGAGTCCTGGCTGCCGACCTGCTGGGACCCAAATTCCTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCAGAAGTGCAAAAGCGGGCGAGAAGGGAAACCCAGGCGGGACAAGGGCTTTTGGAGGGAGGTCAAAGGGCACAGAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTCCTCTTCTCAGGCCTTCTGGCCCGAGAGCCTGTTGACTCTGACACACTCTGAGGAGCTGGTTGTGGTGTTTTCCAGCGAGGGAAGAAGAGAGGAATTTTTTCAAAGCATTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTTGCCGCCATGCCTGGCAGAGACGGAGAGAGGCAGTTTACTCCAGAATGCGGCCGCCACAGATGTTCTCCGCAACCTTCCGGAAGTGGAATGGTGGGAGCTTCGGCATTGCTGCCCACCGACCCCCCGGAAGCGGAAACAGAATCCCCGCGTGCCCCTTCCTCACTACCCTCCAAATCCCGCTGCAGCCATTGCCGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCAGCACCAGCCACCGACACAGCAGCAACCCCCACTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTTCCATCGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGCCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGTTGAACCTCCTTTTCCGGGGCCAGGTCATGGGGGTCCCACCAGGGCAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATGGAAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGTCACTGTCGATATGAGGACCTCTGTGCCTTCTACCATCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCGGCCATGTATTTCTCTGTAGCCCTGTAATGGCTACTGTGAGGCTCTTCCAACACCCTCAGTCAGTGACACACCCACCCCATCCACCACCTCCCCAGTTTGGGGTCCAGAGTTGTGTTGCGTCACTGGTGCGCGGTGTATGCGCTTTCTTCTGATCCAGCCTTTAGAGACTTGCCTTTGGGACCCATCTTTGCTCCCTTAAGTTGCCTCCTGGATCTTCTTTCCCATCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGCATCTGTCCACCTGTTCCCCAGTATTGCCCTCAATTCCTGAGAGCCCTGGAGCGGTTTCCTACCATTCCCTTCTTTTAGCTGCTTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCTTGTGAAACTCAGCCAGGTTGTCTAACCTGGGGTCAAGTTTGGGTGCCTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCTTTTGGATTTCGTAGTTTCTCTGTCAGTAGCATGATCCCCACTGCCGTGGTCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCTTGTAGCCTCTCTCAGTGTCTGTGGCATTTTTGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAACGAGTGAGGCGCTTGACGCCCTCTGGACTTTCCCACTTCCCAACATGGAAGAATTGTGAACTTTCCATCAGACTGCCTCCCTGGGCCTCCCCATTCTTCTCCTGTTGGTTACTCTGGGTCTGACACAGGCCCATGAGATGTCTTATAAAGCCTCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTACTTAGACTATGTCATTGTGAGGTCACCAGTCCTTTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTGGAACCTGGACAGTACTGTCGCCTTCTTCCAACCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAACAGGTCAGGAGTTGTATTGGCAAAGGGAGGGATGAGAGTTGTTGGAGAACTGAGAATGAGGTGttttgttttttttttttctttttaacatttttttATATTAGTAATAAATGCAGTGGAAACCAGCATTTTCTTTAA

Publications

PMID - Link Title
No publications available for this retrocopy