Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PSMC1P7
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr24). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr17:67470480-67472033  UCSC
Strand -
Parental Sequence XM_007987570.1
Parental seq. overlap 1456 bp
Parental seq. overlap (%) 89.9%
Genomic Region Intragenic (THBS4)
Retrocopy Summary PSMC1P7, located on chr17:67470480-67472033, is a retrocopy of the parental gene PSMC1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PSMC1
Full Name N/A
Also known as -
Coordinate chr24:67979449-67995103
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PSMC1P11
Chimpanzee Pan troglodytes PSMC1P6
Bonobo Pan paniscus PSMC1P6
Gorilla Gorilla gorilla PSMC1P5
Orangutan Pongo abelii PSMC1P6
Gibbon Nomascus leucogenys PSMC1P4
Crab-eating macaque Macaca fascicularis PSMC1P6
Rhesus Macaca mulatta PSMC1P6
Baboon Papio anubis PSMC1P7
Golden snub-nosed monkey Rhinopithecus roxellana PSMC1P4
Marmoset Callithrix jacchus PSMC1P4
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PSMC1P7
TCAAGTGGCCAAGGCAAGATGGGTCAAAGTCAGAGTGGTGGTCACCGTCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATCAACACCCTGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGTTGCCAGCAAACTGCCACTGGTGATACCTCACACTCAGTGCTGGTTAAAATTACTGAAGTTAGAGAAAATTAAAGACTATCTTCTCATGGAGGAAGAATTCATTAGAAATCAGGAATAAATGAAACCATTAGAAGAAAAGAGGAGGAAAGATCAAAAGTGGATGATCTGAGGGGAACCCCGATGTCAATAGGAACCTTGGAAGAGATCATCAATGACAATCATGCCATCATGTCTACATCTGTGGGCTCAGAACGCTACGCCAGCATTCTTTCATTTGTAGATAAGGATCTGCTGGAAACTGGCTGCTCGGTCCTGCTCAACCACAAGGTGCATGCTGTGAGAGGGGTGCTGATGGATGACACGAATCCCCTGGTCACAGTGATGAAGGTGGAAAAGGTCCCTCGGGAGACCTATGCCGATACTGGGGGGTTGGACAATCAAATTCCAGAAATTAAGGAATCTGTGGAGCTTCCTTTCACCCATGCTGAATATCATGAAGAGACGGGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACGGGTAAAACCTTGTTAGCCAAAGCAGTAGCAAACCAAACCTCAGCCATTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGTGATGGGCCCAAACTCGTACAGGAATTGTTTCAAGTTCCTGAAGAACATGAACCGTCCATTGTGCTTATTGATGAAACTGGCGCCATTGGGACAGAAAGATATGACTCAAATTCTGGTGGTGAGAGAGAAATTCAGCAAACAATGTTGGAACTGTTGAACATGTTGGATGGATTTGATTCTAGGGGAAATGTGAAAGATATCGTGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCATTAGCAGGAAGATTGAGTTCCCCCTGCCTGATGAAAAGACTAAGAAGCGCATCTTTCAGATTCACCCAGCAGGATGATGCTGGCCAATGAAGTAACCCTGGACAACTTGATCGTGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGCACGGAAGCTGATCTCATGGCCTTAAGAGAACTAGAATGAAAGTAACAAATGAAGATTTCAAAAATCTAAAGAAAATGTTCTTTATAAGAAACAGGAAGGCACCCCTAAGGGGCTGTCTCTCTAGTGAACCACAGCTACCATCAGGAAAATGGATGGGAGATTTATGAATCCCTGAAAGGGATGAGGTTGGGGGAGTTGCCCAGAGGAATCCCTGTTCCCATTGATTTTTATTAGCAAAACATCCTGTGTCTTTTGGAGTACAATGTGTAAGTGCCTATTGGGTGGCCTTCTTCTGTTGGTCACTGTGAAGCAGCCTGCTTCCCAATAAAGTGTGTTCTTTCACC
>XM_007987570.1
GACTTCCGCCTCTGGCGGGCCGCAGTGGTGGAGGAACTTCCGGCAGCGGCAGCTCAAGTGGCCAAGGCAAGATGGGTCAAAGTCAGAGTGGTGGTCATGGTCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACCTCCTGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACGAAGGGACCAGATGCTGCCAGCAAACTACCACTGGTGACACCTCACACTCAGTGCCGGTTAAAATTACTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAAGAATTCATTAGAAATCAGGAACAAATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGATCAAAAGTGGATGATCTGAGGGGGACCCCGATGTCAGTAGGAACCTTGGAAGAGATCATTGATGACAATCATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTCAGCATTCTTTCATTTGTAGACAAGGATCTGCTGGAACCTGGCTGCTCGGTCCTGCTCAATCACAAGGTGCATGCCGTGATAGGGGTGCTGATGGATGACACGGATCCCCTGGTCACAGTGATGAAGGTGGAAAAGGCCCCCCAGGAGACCTATGCGGATATTGGGGGGTTGGACAACCAAATTCAGGAAATTAAGGAATCTGTGGAACTTCCTCTCACCCATCCTGAATATTATGAAGAGATGGGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTGTTAGCCAAAGCTGTAGCAAACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGTGATGGGCCCAAACTCGTACGGGAATTGTTTCGAGTTGCTGAAGAACATGCACCGTCCATCGTGTTTATTGATGAAATTGACGCCATTGGGACAAAAAGATATGACTCCAATTCCGGTGGGGAGAGAGAAATTCAGCGAACAATGTTGGAACTGCTGAACCAGTTGGATGGATTTGATTCTAGGGGAGATGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGGCCAGGCCGCATTGACAGGAAGATTGAGTTCCCCCTGCCTGATGAAAAGACGAAGAAGCGCATCTTTCAGATTCACACAAGCAGGATGACGCTGGCTGATGATGTAACCCTGGATGACTTGATCATGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGTACAGAAGCTGGTCTGATGGCCTTAAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAAAATGTTCTTTATAAGAAACAGGAAGGCACCCCTGAGGGGCTGTATCTCTAGTGAACCACGGCTGCCATCAGGAAAATGGTTGGGAAATTTCTCAATCCCTGAAAGGGATGAGGTTGGGGGAGTTGCCCAGAGGAATCCCTGTTCCCACTGATTTTTATTAGCAAAGTATCCTGTGTCTTTTGGAGTACGATGTGTAAGTGCCCATTGGGTGGTCTGTCTGTTGGTCACTGTGCAGCAGTCTGCTTCCCAATAAAGCGTGCTCTTTCACAAGCA

Publications

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