Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RBBP8P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr18). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr1:101345945-101346263  UCSC
Strand -
Parental Sequence XM_007974467.1
Parental seq. overlap 268 bp
Parental seq. overlap (%) 8.2%
Genomic Region Intragenic (ENPP1)
Retrocopy Summary RBBP8P1, located on chr1:101345945-101346263, is a retrocopy of the parental gene RBBP8. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RBBP8
Full Name N/A
Also known as -
Coordinate chr18:57501070-57617301
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RBBP8P1
Chimpanzee Pan troglodytes RBBP8P1
Bonobo Pan paniscus RBBP8P1
Gorilla Gorilla gorilla RBBP8P1
Orangutan Pongo abelii RBBP8P1
Gibbon Nomascus leucogenys RBBP8P2
Crab-eating macaque Macaca fascicularis RBBP8P1
Rhesus Macaca mulatta RBBP8P1
Baboon Papio anubis RBBP8P1
Golden snub-nosed monkey Rhinopithecus roxellana RBBP8P1
Marmoset Callithrix jacchus RBBP8P1
Mouse lemur Microcebus murinus RBBP8P1
Dolphin Tursiops truncatus RBBP8P1
Pale spear-nosed bat Phyllostomus discolor RBBP8P2
Greater horseshoe bat Rhinolophus ferrumequinum RBBP8P2
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RBBP8P1
AGATGAAGAGGAGGAATCTTCAGCTCCACCAAGAAACCAGACACTCACGGGGATAAACATCATAAAGTCAAAGAGAAAGCATTCATGGCCATATTTTAAAGATAAGGGGGAAACTAGCTTACAACATTTTTCTCACATTAAGGTGGTTCAGAAGAAAGAAGAGAGAACCAAATTCCTTGGTCATACATATAAGGAATATGAAGTTTATCGTGTAGATATTCCAGCAGAAGAAAGAAAAGAAGTTGACTTCCTATTCAAGACATTTTGCTAAATTCCATCCAACACACCAGAGAATTTCTGGGAAGCTGGTTTTTCTTCT
>XM_007974467.1
AAACCTGCCCAGCCAGTTAAATGAAAGGCATATTAGGTTATCCATTGCACACAGTATATAGCTTAGATGCAGCAGAACTCTTCCACATAGCAGTAGTGTCTAGCAAACTAGTGTGGTCCAGAGGTGGTGTTCACTGATTTAATGTTTAAGTTCATAGCTTCAGGGAAAGTGAGCAGTGAAACAATTTCTGCTTTTCACCAAGAGCAGAGGTTTCTAAATAAATTGAAGGGTATTTGACCTGTCCAAAGACGACTTGATACTTCTATAATGTAACAGAAAAGGTCAGAAAATATTAAGCAAATAGAAGTGTGGAGCATATTAAGCAAGATGAACATCTCGGGAAGCAGTTGTGGAAGCCCTAACTCTGCAGATATATCTAGTGACTTTAAGGACCTTTGGACAAAACTAAAAGAGTGTCATGATAAAGAAGTACAAGGTTTACAAGTAAAAGTAACCAAGCTAAAACAGGAACGAATCTTAGATGCACAAAGACTAGAAGAATTCTTCACCAAAAATCAACAGCTGAGGGAACAGCAGAAAGTCCTTCATGAAACCATTAAAGTTTTAGAAGATCGGTTAAGAGCAGGATTATGTGATCGCTGTGCAGTAACTGAAGAACATATGCGGAAAAAACAGCAAGAGTTTGAAAATATCCGGCAGCAGAATCTTAAACTTATTACAGAACTTATGAATGAAAGGAATACTCTACAGGAAGAAAATAAAAAGCTTTCTGAACAACTCCAGCAGAAAATTGAGAATGATCAGCAGCATCAAGCAGCTGAGCTTGAATATGAGGAAGACATTATTCCAGATTCACCAATAACAGCCTTCTCATTTTCTGGCGTTAACCGGCTACGAAGAAAGGAGAACCCCCATGTCCGATACATAGAACAAACACATACTAAATTGGAGCACTCTGTGTGTGCAAATGAATTGAGAAAAGTTTCCAAGTCTTCAACTCATCCACAACATAATCCTAATGAAAATGAAATTCTAGTAGCTGACACGTATGACCAAAGTCAACCTCCAATGGCCAAAACACATGGAACAAGCAGCTGTACCCCTGATAAGTCATCTTTTAATTTAGCTACAGTTGTTGCTGAAACACTTGGACTTGGTATTCAGGAAGAATCTGAAACTCAAGGTCCCATGAGCCCCCTTGGTGATGAGCTCTACCACTGTCTGGAAGGAGATCACAAGAAACAGCCTTTTGAGGAATCTACAAGAAATACTGAAGATAGTTTAAGATTTTCAGATTCTGCTTCAAAGACTCCTCCTCAAGAAGAATTACCTACTCGAGTGTCATCTCCTGTATTTGGAGCTACCTCTAGTATCAAAAGTGGTTTAGATTTGAATACAAGTTTGTCCCCTTCTCTTTTACAGCCTGGGAAAAAAAATCATCTGAAAACACTCCCTTTTAGCAACACTTGTGTATCTAGATTAGAGAAAACTAGATCAAAATCTGAAGATAGTGCCCTTTTCACACATCAGAGTCTTGGGTCTGAAGTGAACAAGATCATTATCCAGTCATCGTCTAATAAACAGATACTTATAAATAAAAATATAAGTGAATCCATAGGTGAGAAGGGTAGGACTGAATACGTTAAAGATTCTAACTCCGATAAACATTTGGAGCCCCTGAAATCATTGGGAGGCCGAACATCCAAAAGGAAGAAAACTGAGGAAGAAAGTGAACATGAAGTAAGCTGCCCCCAAGCTTCTTTTGATAAAGAAAATGCTTTCCCTTTTCCAATGGATAATCAGTTTTCCATGAATGGAGACTCTATGATGGATAAACCTCTGGATCTGTCTGATAGATTTTCAGCTATTCAGCGTCAAGAGAAAAGCCAAGGAAGTGAGACTTCTAAAAACAAATATAGGCAAGTGACTCTTTATGAGGCTTTGAAGACCATTCCAAAGGGCTTTTCCTCAAGCCGTAAGGCCTCGGATGGCAACTGCATGTTGCCCAAAGATTCCCCAGAGGAATCTTTACAGGAATGCATCATCCTTCAGCCCTTGAGTAAATTCTCTCCAGACAATAAACCAGCATTACAGATAAAAGAAGAAAATGCTGTCTTCAAAATTCCTCTACGTCCACGTGAAAGTTTGGAGACTGAGAATGTTTTAGATGACATGAAGGGTGCTGGTTCTCATGAGCCAATAAAAATACAAACCAGGTCAGTCCATGGAGGATGTGAACTTGCATCAGTTCTTCAGTTAAATCCATGTAGAACTGGTAAAATAAAGTCTCTACAAAACAACCAAGATGTATCCTTTGAAAATATCCAGTGGAGTATAGATCCGGGAGCAGACCTTTCTCAGTATAAAATGGATGTTACTGTAATAGATACAAAGGATGGCAGTCAGTCAAAATTAGGAGGAGAAACAGTGGATATGGACTGTACCTTGGTTAGTGAAACCGTTCTCTTAAAAATGAAGAAGCAAGAGCAGAAGGGAGAAAAAAGTTCAAATGAAGAAAGAAAAATGAATGATAGCTTGGAAGATATGTTTGATCAGACAACACATGAAGAGTATGAATCCTGTTTGGCAGATAGTTTCTCCCAAGCAGCAGATGAAGAGGAGGAATTGTCTGCTGCCACAAAGAAACCACACACTCATGGTGATAAACAAGACAAAGTCAAGCAGAAAGCATTTGTGGAGCCGTATTTTAAAGATAATGAAAGAGAGACTAGCCTGCAAAATTTTCCTCATATTGAGGTGGTTCGGAAAAAAGAGGAGAGAAGAAAACTGCTTGGGCACACATGTAAGGAATGTGAAATTTATTATGCAGATATGCCAGCAGAAGAAAGAGAAAAGAAGTTGGCTTCCTGCTCAAGACACCGATTCCGCTACATTCCACCCAACACACCAGAGAATTTTTGGGAAGTTGGTTTTCCTTCCACTCAGACTTGTATGGAAAGAGGTTATATTAAGGAAGATCTTGATCCTTGTCCTCGCCCAAAAAGACGTCAGCCTTACAACGCAATATTTTCTCCAAAAGGCAAGGAGCAGAAGACATAGACGTTGAAACAGAAACAGTAGGATGGAGCAGTTTTTTCCTTCTTATTTATACTTAAAGTTGGTATTAAACATTGGTTTTTTGATCTTTTATAAATGGATTTATAAATCAGTTTTCTATTGAAAATGTTTGCGATATTTTGCTTTTGCACCTTTAAAACAATAAGGCGCTTTCATTTTGCACTCTTAACTTAAGAGTTTTTATTTACTTTATGTAGTGATACCTAATACAATTTTGAAAATACAATAGTTGTAGTCTGA

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