Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name RPL31P28
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr11:69248740-69249169  UCSC
Strand +
Parental Sequence XM_008008198.1
Parental seq. overlap 379 bp
Parental seq. overlap (%) 72.9%
Genomic Region Intragenic (UMAD1)
Retrocopy Summary RPL31P28, located on chr11:69248740-69249169, is a retrocopy of the parental gene RPL31. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL31
Full Name N/A
Also known as -
Coordinate chr14:4710622-4714974
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL31P88
Chimpanzee Pan troglodytes RPL31P42
Bonobo Pan paniscus RPL31P41
Gorilla Gorilla gorilla RPL31P45
Orangutan Pongo abelii RPL31P43
Gibbon Nomascus leucogenys RPL31P25
Crab-eating macaque Macaca fascicularis RPL31P50
Rhesus Macaca mulatta RPL31P49
Baboon Papio anubis RPL31P43
Golden snub-nosed monkey Rhinopithecus roxellana RPL31P37
Marmoset Callithrix jacchus RPL31P50
Dog Canis familiaris RPL31P68
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL31P28
TTTCCTTTCCAACTTAGACCCAGCAGAATGGCTCCTGCAAAGAAGGGCAGCAAGAAAAAAAAAGACCATTCTGCCATCATTGAGGTGGTGACCCAACAATACACCATCAACATTCACAAGTATATCCATGAAGTGGGCTTCAAGAAGCACTCAAAGAGATTCGGAAATTTGCCATGAAGGAGATGGGAACTCCAGTTGTGCTCATTGACACCACGCTCAACAAAGCTGTCTGGGCCAAAGGATAAGGAATATCCCATACAGAATCCACGTGTGGTTGTCCAGAAAACGTAATGAGGATAAAGATTCATCAAATAAGCTCTATATTTTGGTTACCTATGTACCTGTGACCACTTTCAAAAATCTACAGACAGTCAATGTGGATGAGAACTAATTGCTGATCATCAAAACATCAAAT
>XM_008008198.1
CACACCCCCTTGCCTGGCGACCCGGAAGTTGTACTTGCAACTGCGACTTTCCTTCTCCCACAATACTTCGCGCTCTTCCTTTCCAGCTTGGACCCGGCAGAATGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAAAAGGGCCGTTCTGCCATCAACGAGGTGGTGACCCGAGAATACACCATCAACATTCACAAGCGCATCCATGGAGTGGGCTTCAAGAAGCGTGCCCCTCGGGCACTCAAAGAGATTCGGAAATTTGCCATGAAGGAGATGGGAACTCCAGATGTGCGCATTGACACTAGGCTCAACAAAGCTGTCTGGGCCAAAGGAATAAGGAATGTCCCATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCACCAAATAAGCTCTATACTTTGGTTACCTATGTACCTGTTACCACTTTCAAAAATCTACAGACAGTCAATGTGGATGAGAACTAATCGCTGATCGTCAAATACATCAAATAAAGTTATAAAATTGA

Publications

PMID - Link Title