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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL39P16
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chrX_KE148108v1_random). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr5:72634242-72634537  UCSC
Strand +
Parental Sequence XM_008019434.1
Parental seq. overlap 268 bp
Parental seq. overlap (%) 52.9%
Genomic Region Intragenic (CUNH16orf95)
Intragenic (CYP2A6)
Intragenic (CPA6)
Retrocopy Summary RPL39P16, located on chr5:72634242-72634537, is a retrocopy of the parental gene RPL39. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL39
Full Name N/A
Also known as -
Coordinate chrX_KE148108v1_random:1253819-1259072
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL39P65
Chimpanzee Pan troglodytes RPL39P37
Bonobo Pan paniscus RPL39P36
Gorilla Gorilla gorilla RPL39P34
Orangutan Pongo abelii RPL39P36
Gibbon Nomascus leucogenys RPL39P1
Crab-eating macaque Macaca fascicularis RPL39P55
Rhesus Macaca mulatta RPL39P54
Baboon Papio anubis RPL39P52
Golden snub-nosed monkey Rhinopithecus roxellana RPL39P49
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL39P16
CCCTTTCTCTGCCATCGTGGTGTGTGCTTGACTCCACTTCTTGCCATGTCTTCTCATGAGACTTTCAGAATTAAGCAATTCCTGGCCAAGAAACAAAAACAAAATCGTCCCATTCCTCAATGGATTCAGATGAAAACTGGTAACAAAGTCAGGTACGACTCCAAAAGGAGACACTGGAGAAGAACCAAGCTGGGTCTATCAGGAATTGCATGTGAGATGGCACACATACTTCTGCTGTCTGAAGGTCACAATCACGTTACCATATCAAGCGAAAATGTCACCACTATCTGGAGAGT
>XM_008019434.1
ATGGGAGCGCACCGGTGGGCACAGAAGGCACTGGGAAGAGGCGGTCGGCGAATAGCGTCACCTCCTAAGCTCCGCCCAACAGAAGCGCCTTCTAAGCTCGTTCTTCCGCCTGCTTCCCCCCTCTTTTCCTTTCTCCGCCATCGTGGTGTGTTCTTGCCTCCGCTTCTCGCCATGTCTTCTCACAAGACTTTCAGGATTAAGCGATTCCTGGCCAAGAAACAAAAACAAAATCGTCCCATTCCCCAGTGGATTCGGATGAAAACTGGAAATAAAATAAGGTACAACTCCAAAAGGAGACACTGGAGAAGAACCAAGCTGGGTCTATAAGGAATTGCACATGAGATGGCACATATATTTGTGCTGTCTGAAGGTCACGATCACATTACCATATCAAACTGAAAATGTCACCACTCTCTGGAGAGTTCGACGTATTTTCCTCTCTGAATCTATTATGAATGTGTTGGTTGGCTGGGTTCAGTAATAAATATGTGAGGCCTTTCATTTCAA

Publications

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