Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RSL24D1P11
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr26). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr11:64467264-64467910  UCSC
Strand +
Parental Sequence XM_008016539.1
Parental seq. overlap 546 bp
Parental seq. overlap (%) 33.8%
Genomic Region Intergenic
Retrocopy Summary RSL24D1P11, located on chr11:64467264-64467910, is a retrocopy of the parental gene RSL24D1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RSL24D1
Full Name N/A
Also known as -
Coordinate chr26:28230029-28246108
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RSL24D1P17
Chimpanzee Pan troglodytes RSL24D1P10
Bonobo Pan paniscus RSL24D1P11
Gorilla Gorilla gorilla RSL24D1P11
Orangutan Pongo abelii RSL24D1P10
Gibbon Nomascus leucogenys RSL24D1P9
Crab-eating macaque Macaca fascicularis RSL24D1P14
Rhesus Macaca mulatta RSL24D1P13
Baboon Papio anubis LOC101012615P12
Golden snub-nosed monkey Rhinopithecus roxellana RSL24D1P16
Marmoset Callithrix jacchus RSL24D1P10
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RSL24D1P11
CCCCATCTACCCTGACCACATTATGATGTTCATCTGCAGCAGTTGCAAGGTGTTCAGAGTGTGTAAATACAAATGGCATAAACACTTTAAAAGAAGTGCAATCCTCAGGTTAGGTGGACTCAAGCATTCTGTAAAGCAACTATTAATAATGAGCTTACAGTGGATAATTCATTTGAATTCGGAAAATACAGAAACGAGCCTGTCAAATACCAGCAAGAGCTATGGAATAAAACTACTGATGCAATGAAGACAGTTGAAAAGATCAAATGCCAAGCTAAATGTATAATGAACAAATTGAAGAAAAATAAAGGACTACAGAAAGTTCAGGACATCAAAGAAATTAGACAAAACTCATCTTGACCCCTCTTGCAGGCAAAAGAAAGCAGCTGGAAGAAAAGATGATACAGCAGTTACAACAGGATGCAGACATGGCAGAGGTTTCTTAAAAATCTCATGGTCTATAACCATTTCTATATTTACATTTGTGAAAATCTCCTTTGGAGACTTAGAACCTCTAAATTATTGACTTTTTATATAAGGTCACTCAAATGAAACGTGATTAAAAAATCATCTACATTGCTGTCTACAGAATGTCAGATAATATGGATGTTTGATTGCATCTCATTGTTAACTCTTTACTGATAGAT
>XM_008016539.1
CTAACTGATCCGCGAGAACTAAGGACGCTTGCCTTTTTCCGGTCGGGGGAAGGGGGAAGAAGGTCACTTCCGGTGACGGGGCTGTGTCACTTCCTCTCAAGCTTGGCGTTTGTTTGGTCGGGTCCCACGCGGGTTCAACATGCGTATCGAGAAGTGTTATTTCTGTTCTGGGCCCATCTACCCTGGACACGGCATGATGTTCGTCCGCAACGATTGCAAGGTGTTCAGATTTTGCAAATCTAAATGGCATAAAAACTTTAAAAAGAAGCGCAATCCTCGCAAAGTTAGGTGGACCAAGGCATTCCGGAAAGCAGCTGGTAAAGAGCTTACAGTGGATAATTCATTTGAATTTGAAAAACGTAGAAATGAACCTATCAAATACCAGCGAGAGCTATGGAATAAAACTATTGATGCAATGAAGAGAGTTGAAGAGATCAAACAGAAACGCCAAGCTAAATTTATAATGAACAGATTGAAGAAAAATAAAGAGCTACAGAAAGTTCAGGATATCAAAGAAGTCAAGCAAAACATCCATCTTATCCGAGCCCCTCTTGCAGGCAAAGGGAAGCAGTTGGAAGAGAAAATGGTACAGCAGTTACAAGAGGATGTGGACATGGAAGATGCTCCTTAAAAATCTCTGTAACCATTTCTTTTGTGTACATTTGAAAATACCCTTTGGATACTTGGAACTGCTAAATTATCTTATTTTTTACATAAGGTCACTTAAATGAAAAGTGATTAAAATACATCTTTCCTACATTGCCTTCTACATAACATCAGATATTACGGATGTTAGATTGCATCTCAGTGTTAAATCTTCACTGATAGATGTACTTAAGTAAATCATGAAAATTCTGCTTATAACTATAGAAGTGAATTGTGGATGTAAAATGGTTATGCCATTTGGATAATGGCACTAGGCAGCATTTGTATAGTAACTAATGGCAAAAATTCATGGCTAGTGATGTATAAAATAAAATATTCTTTGCAGTAAAATACTCCCTTTGTTAATGTTATAGAAAAGGGGGATACAAAAAGGAACTAACAATTTGTATGGCAGTATCAGATATTATTTTTGTTTTAATATTTCCTGTTTTGGTTTATTTGCATCTTAGAAGAGCATAATGACATTGTTTGATGAAACCTACATTCTGCTGGACTGTTTTGACCTGGTTTAACCCTTCTGATAGGTAGTTGTGGATGTTGGGGATGAGAACTGAATAATCTGCCTGGAGTGACACTACACTCTAGAATTTCCACTTTGGAGAATATTCAGTTCTCACTTGTGATTCCTGGTAGAACAAACTTTATTTTTCTAGCCCAGCAATGATCTAGAAGCAGAGGAATCCCAGTGCCTTTTAAAAGTTGTTATGTGGTTTTCTTTTAAAAAGCTGCTGATTTTGGAAAGTAGAATTTATGGGTACAAGGTATGTTCATTATTTGTAAGTAAAATAAAACCATTTAAAAAGTAATGTGATATTTATTATTTAAAGGCACTAAACAAAGATATGAAGTATTGATTATCTGGAAGAAGAAATCTTCCTCCACACATCCCATTTAAGTAGGAGATACATTTAATTAAAGAGAAATAGATACTTAA

Publications

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