Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name SETP4
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr7:57475364-57476335  UCSC
Strand -
Parental Sequence XM_008006035.1
Parental seq. overlap 794 bp
Parental seq. overlap (%) 39.6%
Genomic Region Intergenic
Retrocopy Summary SETP4, located on chr7:57475364-57476335, is a retrocopy of the parental gene SET. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SET
Full Name N/A
Also known as NULL
Coordinate chr12:9446265-9453991
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SETP20
Chimpanzee Pan troglodytes SETP8
Bonobo Pan paniscus LOC100974453P1
Gorilla Gorilla gorilla SETP7
Orangutan Pongo abelii SETP7
Gibbon Nomascus leucogenys SETP12
Crab-eating macaque Macaca fascicularis SETP7
Rhesus Macaca mulatta SETP8
Baboon Papio anubis SETP6
Golden snub-nosed monkey Rhinopithecus roxellana SETP5
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SETP4
TGTCTGCACTGCTGGGGAACGAAAACGAAGAGGCATTGCATTATTTGACCAGAGTTGAAGTGACAGAATTTGAAGATATTAAATCAGGTTACAGAGTAGATTTTTATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTCTTCAAATAATTTAATCTGAATGAGAGTTAATCCATCTTCAAAGTCCACTGAAATCAAATGGAAGTCTGGAAAGGATGTGAGTAAACATTTAAGTCAAATGCAGAATAAAGCCAGCAGGAAGAGGCAGCATGAGGCACCAGAGAGCTTCTTGACCTGGTTTACTGACCATTCTGATGCAGACGCCGATGACTTAGGAGAGGACATCAAAGGTGATATTTGGCCAAACCCATTACAGTACTGCTTGGTTCCCGATATGgAGGGGAGGGACAGGAGGATGAAAGAGATGACTAACAGAACACTGACGGATTCCAACCTTCCCCCTTTTAAATTTTATCCAGTCCCTGGGGGCAAGTTGTAGTCTGTTTTGTTTTGTTTTTGCCTCTTGTGCTCAGTTGCCTTATTCTTGAGGTCTCCTTTTTCTACACTTATTTGGGAGAAATATCTTGAGCAGAATACAATGAGAAAAGAGTCTTTACCCTTCTGTTTGAAATTCATTGTTATCCCTTCCTGACTGAATAAAAACTGTATGGAGTCAACACCACCGAGCTCTGTGGGAAAAAAAAAAAAACCTGCTCCCTTCGCTCTGCTGGAAGCTGGAGGGTGCTAGGGCCCTGCGTAGCAGTCCATAGAATTCTAGCTTCTTGCCTCCTTTCTCTGTATACTGGGCTCAGAAAGTACACTGTGTGTGTATGTGAATATGGACAGTTAGCACTGACCAACATGTAC
>XM_008006035.1
ggcggCTCGGGAGAGCTAGCAGCGAGCTGGCTGGATCGCCGAGCGCGAGTGAGGGAGCCGAgccgcccgccgccgccgccgcctccgcctcccctccgcTAACAGGAGCCCGGGCCGGGGCCCGGCACGCCGCCCCAGCCCGTCCCTCGGCGTCAGGCCGCGAGGGCAGCGCGCGCGAGCGAGCGAGGGGGAGGGAGAGCGAGCGAGCGCCGGGAGGAGGCGGCCGGACCGAGCGGGCGCCCGCGCGTGTGGCGTGAGGGGAAGCCGCCTGcccgcccccttcgccttcccttctctccccctccccgctccccccccGACAGCGGAGCAGCACCATGTCGGCGCCGGCGGCCAAAGTCAGTAAAAAGGAGCTCAACTCCAACCACGACGGGGCCGACGAGACCTCAGAAAAAGAACAGCAAGAAGCAATTGAACACATTGATGAAGTACAAAATGAAATANNNNNNNNNNaaaaaaaaaaaaaaaaaCTCAAAGATGGGAAAAGACTTGCAGCTACTGCTTTCTATTCTGTTTAGGAGAAGCTATATTCTAATTGCTTGATGAAAGATAGTGACATGTCTGCACTGCTTGGGGAGGAAGACGAAGAGGCACTGCATTATTTGACCAGAGTTGAAGTGACAGAATTTGAAGATATTAAATCAGGTTACAGAATAGATTTTTATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAATGAGAGTGGTGATCCATCTTCAAAGTCCACCGAAATCAAATGGAAATCTGGAAAGGATTTGACGAAACGTTCAAGTCAAACGCAGAATAAAGCCAGCAGGAAGAGGCAGCATGAGGAACCAGAGAGCTTCTTTACCTGGTTTACTGACCATTCTGATGCAGGTGCTGATGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCCAAACCCATTACAGTACTACTTGGTTCCTGATATggatgatgaagaaggagaaggagaagaagatgatgatgatgatgaagaggaggaaggattagaagatattgatgaagaaggggatgaggatgaaggtgaagaagatgaagatgatgatgaaggggaggaaggagaggaggatgaaggagaagatgaCTAATAGAACACTGATGGATTCCAACCTTCCTTTTTTTAAATTTTCTCCAGTCCCTGGGAGCAAGTCGCAGTCtttttttttttttttttttttttCCTCTTGTGCTCAGTCACCCTGTTCTTGAGGTCTCTTTTCTCTACTCCATGGTTCTCAACTTATTTGGGGGGAAATACCTTGAGCAGAATACAATGGGAAAAGAGTCTCTACCCCTTTCTGTTTGAAGTTCATTTTTATCCCTTCCTGTCTCAACAAAAACTGTATGGAATCAACACCACCGAGCTCTGTGGGAAAAAAGAAAACCCTGCTCCCTTCGCTCTGCTGGAAGCTGGAGGGTGCTAGGCCCCTGTGTAGTAGTGCATAGAATTCTAGCTTTTTTCCTCCTTTCTCTGTATATTGGGCTCAGAGAGTACACTGTGTCTCTATGTGAATATGGACAGTTAGCATTTACCAACATGTATCTGTCTACTTTCTCTTGTTTAAAAAAAGAAAAAAAACTTAAAAAAATGGGGTTATAGAAGGTCAGCAAAGGGTGGGTTTGAGATGTTTGGGTGGGTTAAGTGGGCATTTTGACAACATGGCTTCTCCTTTGGCATGTTTAATTGTGATATTTGACAGACATCCTTGCAGTTTAAGATGACACTTTTAAAAATAAATTCTCTCCTAATGATGACTTGAGCCCTGCCACTCAATGGGAGAATCAGCAGAACCTGTAGGATCTTATTTGGAATTGACATTCTCTATTGTAATTTTGTTCCTGTTTATTTTTAAATTTTCTTTTTGTTTCACTGGAAAGGAAAGATGATGCTCAGTTTTAAACGTTAAAAGTGTACAAGTTGCTTTGTTACAATAAAACTAAATGTGTACACAAAG

Publications

PMID - Link Title