Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SLC25A5P3
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chrX_KE148108v1_random). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr7:132248443-132249648  UCSC
Strand -
Parental Sequence XM_008019418.1
Parental seq. overlap 1099 bp
Parental seq. overlap (%) 86.2%
Genomic Region Intergenic
Retrocopy Summary SLC25A5P3, located on chr7:132248443-132249648, is a retrocopy of the parental gene LOC103247334. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC103247334
Full Name N/A
Also known as SLC25A5
Coordinate chrX_KE148108v1_random:938707-941617
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SLC25A5P6
Gorilla Gorilla gorilla SLC25A5P2
Orangutan Pongo abelii SLC25A5P2
Gibbon Nomascus leucogenys SLC25A5P3
Crab-eating macaque Macaca fascicularis SLC25A5P6
Rhesus Macaca mulatta SLC25A5P6
Golden snub-nosed monkey Rhinopithecus roxellana SLC25A5P1
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SLC25A5P3
GAGTCAAAGCCGGTTCCCGCCCAGTCCCGTCCCCCAGCAGCCTGCCTCCTCTTCCTTTCAACATGACAGATGCCACTGCATCCTTGCCAAGGACTTCCTGGCAGGTGGAGTGACTGCGGCCATCTCCTAGATGGTGGTAGCACCCATGGAGGGGTCAAGCTGCTGCTGCAGGTGCAGAGTGCCAGCAAGCAGATCACTGCAGATAAGCAATACAAAGGCGTTGTAGACTGCATGCTCCGTATTCCCAAGGAGCAGGAGTCCTGTCCTTCTGGCATGTAACTTGGCCAATGTCATCAGATACTTCCCTACCCACGCTCTCAACTTCACCTTCAAAGATATGTACAAGCAGATCTTCCTGGGGCGTGTGGACAAGAGGATCCAGTTTTGGCTCAATTTTGCAGGGAATCTGGCATCAGGCGGTGCCCCCGGGGCCACATCCTTGTGTTTTGTGTATCCCCTTGATTTTACCCGTCCCCATCTAGCAGCCGATGTGGGTAAAGCTAGCGCTGAAAGGGAATTCTGAGGCCTTGGTGACTGCCTGGTTAAGATCTACAAATCTGATGGGATTAAAGGCCTGTACCAAGGCTCTAACATGTCTGTGCAGGGTATTATCATCTACCGAGCTGCCCATCGGTGTCTATGACACTGCAAAGAGAAAGCTTCCAGATTCCAGGACCACTCACATCGTCATCAGCAGGATGATCGCACAGTCCGTCACTGCCATTGCTGGGTTGACTTCCTATCCATTTGACACTGTTCGCCACAGCATGATGATGCAGTCAGGGCACAACTGACATCATGTACACAGGCACGCTTCACTGCTGGAGGAAGGTTGCTCGTGGTGAAGGAGGCAGAGCTCTTTTCAAGGGTGCATGGTCCAATGTTCTCAGAGGCATGGGTGGTGCTTTGGTGCTTGTCTTGTATGATGAAATCAGAAGTACACACAAGTTATTTCCCAGGTTGCTTCCGCCGTGAACGGGCATGTTGTATTATATAACATATCTTGAGCATTCTTGACAGACTCCTGACTGTCAGTTTATCAGTGGCAACTGTTTGCTGGTTGAAAATGGGAAGCAATGATATTCGTCTGACCAGTTTTCTCTTAAAGCCGTTTCCATGATGATGATGATAGCACTCAATTATATTTTTTTATGTCGGTTGCTCCTGATAAATAAATTCGGAGAAAGAAAAATATCTAAAATAAAA
>XM_008019418.1
ggctccccctATATAAATCGGCCATTTGCTTCGCTCCGCCCCGCAGCGCCGGAGTCAAAGCCGGTTCCCGGCCCAGTCCCGTCCCGCAGCAGCCTGCCTCCTCTTTCCTTTCAACATGACAGATGCCGCTGTGTCCTTCGCCAAGGACTTCCTGGCAGGTGGAGTGGCCGCAGCCATCTCCAAGACGGCGGTAGCGCCCATCGAGCGGGTCAAGCTGCTGCTGCAGGTGCAGCATGCCAGCAAGCAGATCACTGCAGATAAGCAATACAAAGGCATTATAGACTGCGTGGTCCGTATTCCCAAGGAGCAGGGAGTTCTGTCCTTCTGGCGCGGTAACCTGGCCAATGTCATCAGATACTTCCCCACCCAGGCTCTTAACTTCGCCTTCAAAGATAAATACAAGCAGATCTTCCTAGGTGGTGTGGACAAGAGGACCCAGTTTTGGCGCTACTTTGCAGGGAATCTGGCATCAGGTGGTGCTGCAGGGGCCACATCCCTGTGTTTTGTGTACCCTCTTGATTTTGCCCGTACCCGTCTAGCAGCTGATGTGGGTAAAGCTGGAGCTGAAAGGGAATTCCGAGGCCTCGGTGACTGCCTGGTTAAGATCTACAAATCTGATGGGATTAAGGGCCTGTACCAAGGCTTTAACGTGTCTGTGCAGGGTATTATCATCTACCGAGCCGCCTACTTCGGTATCTATGACACTGCAAAGGGAATGCTTCCGGATCCCAAGAACACTCACATCGTCATCAGCTGGATGATCGCACAGACTGTCACTGCTGTTGCTGGATTGACTTCCTATCCATTTGATACTGTTCGCCGCCGCATGATGATGCAGTCAGGGCGCAAAGGAACTGACATCATGTACACAGGCACGCTTGACTGCTGGAGGAAGATAGCTCGTGATGAAGGAGGCAAAGCTTTTTTCAAGGGTGCATGGTCCAATGTTCTCAGGGGCATGGGTGGTGCTTTTGTGCTTGTCTTGTATGATGAAATCAAGAAGTACACATAAGTTATTTCCTAGGATTTTTCCCCCTGTGAACAGGCATGTTGTATTATATAACATATCTTGAGCATTCTTGACAGACTCCTGGCTGTCAATTTCTCAGTGGCAACTATTTACTGGTTGAAAATGGGAAGCAATAATATTCATCTGACCAGTTTTCTCTTAAAGCCGTTTCCATGATGATGATGGGACTCAATTGTATTTTTTATTTCAGTCACTCCTGATAAATAACAAATTTGGAGAAATAAAAATATCTAAAATAAA

Publications

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