Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SSR1P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr3:54246484-54246649  UCSC
Strand +
Parental Sequence XM_007973775.1
Parental seq. overlap 138 bp
Parental seq. overlap (%) 4.2%
Genomic Region Intergenic
Retrocopy Summary SSR1P1, located on chr3:54246484-54246649, is a retrocopy of the parental gene SSR1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SSR1
Full Name N/A
Also known as -
Coordinate chr17:64879447-64905046
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gibbon Nomascus leucogenys SSR1P1
Crab-eating macaque Macaca fascicularis SSR1P1
Rhesus Macaca mulatta SSR1P1
Baboon Papio anubis SSR1P1
Horse Equus caballus SSR1P1
Velvety free-tailed bat Molossus molossus SSR1P1
Greater horseshoe bat Rhinolophus ferrumequinum SSR1P1
Egyptian rousette Rousettus aegyptiacus SSR1P2
Sloth Choloepus didactylus SSR1P6
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SSR1P1
TTAGAATCTAGAAAACAAAAGAGACCCATACAGAAAATAGAAATGGATACATCAAACCAAATGATGCTAACATGAGTTGATTCCTCACAAAACTTTGAATCAGATAATAACACTTTACTCAGAAGTTTTCCCAGAAAAGAGGCACAGAAGAGATCAATGGCATCTG
>XM_007973775.1
CCGCCCCTCGCCGCCCGGAGCCCGGATGAAGAGTAACGCCATTACCGCCAGAGCAGCCGAGAGCCGTCCCGGACAGAGACTGGACACTGGACCGGCAGCGCCATGAGACTCCTCCCCCGCTTGCTGCTGCTTCTCTTGCTCGTGTTCCCTGCCACTGTCTTGTTCCGAGGCGGCCCCAGAGGCTCATTAGCAGTGGCACAAGATCTTACagaggatgaagaaacagtagaagattctataattgaggatgaagatgatgaagccgaggtagaagaagatgaaCCCACAGATTTGGTAGAAGATAAAGAGGAAGAAGATGTGTCTGGTGAACCTGAAGCTTCACCAAGTGCAGATACAACTATACTCTTTGTAAAAGGAGAAGATTTTCCAGCAAATAACATTGTGAAGTTCCTGGTAGGCTTTACCAACAAGGGTACAGAAGATTTTATCGTTGAATCCTTAGATGCCTCATTCCGTTATCCTCAGGACTACCAGTTTTATATCCAGAATTTCACAGCTCTTCCTCTGAACACTGTAGTGCCACCCCAGAGACAGGCAACTTTTGAGTATTCTTTCATTCCTGCAGAGCCCATGGGCGGACGACCCTTTGGTTTGGTCATCAATCTGAACTACAAAGATTTGAACGGCAATGTATTCCAAGATGCAGTCTTCAATCAAACAGTTACAGTTATTGAAAGAGAGGATGGGTTAGATGGAGAAACAATCTTTATGTATATGTTCCTTGCTGGTCTTGGGCTTCTGGTTATTGTTGGCCTTCATCAACTCCTAGAATCTAGAAAGCGTAAGAGACCCATACAGAAAGTAGAAATGGGTACATCAAGTCAGAACGATGTTGACATGAGCTGGATTCCTCAGGAAACATTGAATCAAATCAATAAAGCTTCACCAAGAAGGTTGCCCAGGAAACGGGCACAGAAGAGATCAGTGGGATCTGATGAGTAAATGTTCCTTTGTGCAACAATTCGGTCTTTACTTAACCTGCCCTAATATTTTTCGGCCTGATGGGAATTAGTGCAGAGAAGCCGTATCACCATAGAAGGCAACTACTACTTATGTGTGGACTGAGCAATCAGAGTCTGTGGCGATAATATTGCTGAAAATGCACTGCATTCATTTTTCTAAAGTAACAAATTTGGTTTTTTTTTAAACCATTAAAATCTAtgtgtgtgcgtgtgtatgtatgtgAGCAGTTGGTCTTACCAGAGTCATTGTTGAACTACCTGAAACAAGTCTTTAGAATACTAAATATAATGCAGTTGTCTCTTCCTTTTTGACATTTTCTGATTTTTCCCCCAAACCTCAGTTAATATTTACCCACTATGATTATTGATGTCCTGCCTTGAACAGTTTTAAAGAAAACAATTGTTGGAATAGCTCAAATTTCAATTGATGGCACAAATTAACATTTCGTTGTTGTTGCTGTGTTACAATTAGTATTCTAAAGGCAGAAGCAGAAGTAGCTGCTTTTTAGCAATAGAATTGTTTCGGTATTTTGCTGCTGTTTAATGCACACCTTCAGAAAACTTCCCAGTGGATTCAAGCAATTTGGGGATCTCTCTGGCAACAAATTGTGAACACAAAATTTCTGCTGACTTTAATATATGAAACCTAATCCTACCCCCTTTTTTAACAAAAAGAAACTAGTATATTTGTGAAACAGTTGTCCGTTGTTGCTCTAGTTCTGACCCAGAGATAACTCTGAAGTGATTTTAGACCTACTCACTCAgttgtgtgtaggtttttttgttttgttttgAGAGAATTTTTCTCTCCTTAATAGAAGCATCCTTTTTAAAGAAAAGTTGCCTTGGTCCACAGGCTAAGCAGAAAATCAAGTTATCAGGACAGAGATATTTCCCAATTAACTCCTAATCAATGAAGAAAGTGAGTTGGACATTTTTAAAGCAGTTAACTAATTGTTTCTTATCTAATCTTTTGGGAGTTTTGCTTGTTGATAAAACCTTTTTAGTTAATCTGAAAGATTCCAAAAATTGTTCTTAAGTGCTTAAGACTGAAACCAAAATTAAATTGTACTTCATAAAATCCTCTTACAGAGTTACTCTTGCCCTAGACTATAAATTAAGTTTGACATTATTGTCAGACTGGATGGAGGGTGAAGTAAAATAGTACGAACAGTTAAGAGGCTCTCCCCTTCTTGTCTTTAAGCCATATTCTCCCACATGTATTTTATAAGAAAATGATAAGTCAAATTTTAGTGGTTCTTTAATTCCTGACCTCTTCATTCTCCTTTTCAGTATAACCTCCCCTACACTCATGCCCacacagacaaaaaacaaaacaaaatacacacagaaaaaGTCTTTCCAGACTGTTTAAGTATTTAAACATCTGAGCCAAAGCCGATGACAATAGAATATAAGTTATTGTATAATTGTTAATCACTTTGCAAATAGGGGCTAAGATATCAAATTACCTATATTGGCATTGCTGAATTACAAACTCTATATCTGTAATATAAAGTGTTTGAGTTTTTAATTGGGCTATTATGATGAGTAGTTTATTTTAAAAAAGCTCTATGAGCTCTAAGTAACTGCATGGTTTTTTATTTAATGTAATATAGGACACCCTTCACATTCTCAAGGAATATATTCCAGAATTTTTGTGAATATCTAAGTTTGTGAAACTACTACAGCATGATACAGTAAGGTGTAATTACAGAATTTACAAAATGTAAATGGCCTCTAGAGAGTTTTATGGAATACCTGGTAATAATGTAGGCAGTTGCAAAACCACACTGAGTTACAACTGCCAGCCCTCCTCATTGCCTTACATACCAGCCCTCCTACTTCTGAAGTTCAAATTAGTGCCTCAGAAATGTAGAATTTATTATTTGTCATGTTTTATTTTTTTTTTAGCATAGATTGAGAACAGTTGAACTCTTAAATCCTCAGATGCCAGGGGTCTGCTCTAGCATCAGTAAGTATTTAGCAGAAACTAACTCCGTAATGAATGGAATTCAATTCCACACATGGTTTGTTCAAGCACACTTAATAAGTAGCCTATTTTTTAAATGTCTTTTTAAAATGTAAATATTTGGATGAAGTTTTTCTTTGTTTTGATATATTCATTTGCTACACCAACTATGTTTTCAGAATTCATCTTTTGAACAACTTGGTTTCAGAATATGTAAAATGACTTTAAGGATCTTGTGTATCAAACCTGTCCCCAGATGTGTGAGAATAATATGTTCATAAAGCATGGATCTCGCTTTG

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