Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TCEB2P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr1:121109446-121109891  UCSC
Strand -
Parental Sequence XM_007983039.1
Parental seq. overlap 397 bp
Parental seq. overlap (%) 88.2%
Genomic Region Intergenic
Retrocopy Summary TCEB2P1, located on chr1:121109446-121109891, is a retrocopy of the parental gene ELOB. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ELOB
Full Name N/A
Also known as TCEB2
Coordinate chr5:2564662-2570035
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ELOBP2
Chimpanzee Pan troglodytes ELOBP2
Bonobo Pan paniscus ELOBP2
Gorilla Gorilla gorilla ELOBP1
Orangutan Pongo abelii ELOBP1
Gibbon Nomascus leucogenys ELOBP2
Crab-eating macaque Macaca fascicularis TCEB2P3
Rhesus Macaca mulatta ELOBP4
Baboon Papio anubis ELOBP3
Marmoset Callithrix jacchus ELOBP8
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TCEB2P1
CGGCCGCGCCGGCGCATTGAGAGAAGCGGAAATCGCCGCGAAGGACGTGTTCCTCATGATTCGGCGCCACAAGACCGCCATCTTCACTGATGCCGAGGAGCCCAGCACGGTGTTCGAGCTGAAGCGCATCGTGGAGGGAATCCTCAAGCGGCCTCCCGACGAGCAGCGGCTATGCAAGGACGACCAGCTCTTGGATGATGGCAAGACACTTGGCGAGTGTGGCTTCACCAGCCAAACAGCATGGCCACTGGCTCCAGCCATAGTGGGGCTGGCCTTCCAGGCAGACGACACCTTTGAGGCCCTGTGCATCGAGCCGTTCTCCAGCCCGCCCGAGCTGCTCGTCGTGATGAAGCCCCAGGACTCTGGAAACAGTGCCGGTGAACCAGCTGTGCAGTGAGGACCCCCGAGAGGCGTATTCCCCCCAGTAAAAGAGATTTGGGAGTCTG
>XM_007983039.1
CGGCCGCGCCGGCGCGTCGAGGGGAGAGGCAGCCGCCGCGATGGACGTGTTCCTCATGATCCGGCGCCACAAGACCACCATCTTCACGGACGCCAAGGAGTCCAGCACGGTGTTCGAGCTGAAGCGCATCGTCGAGGGCATCCTCAAGCGGCCTCCTGACGAGCAGCGGCTGTACAAGGATGACCAACTCTTGGATGATGGCAAGACCCTGGGCGAGTGTGGTTTCACCAGTCAAACAGCACGGCCACAGGCCCCAGCCACAGTGGGGCTGGCCTTCCGGGCAGAGGACACCTTTGAGGCCCTGTGCATTGAGCCGTTCTCCAGCCCACCTGAGCTGCCCGATGTGATGAAGCCCCAGGACTCGGGAAGCAGTGCCAATGAACAAGCCGTGCAGTGAGGACCCCCAAGAGGCCCATTCCCCCCAATAAAAGAGATTTGGGAGTCTTCCTG

Publications

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