Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name WHSC1L1P1
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr16:62688069-62690851  UCSC
Strand +
Parental Sequence XM_007962207.1
Parental seq. overlap 2280 bp
Parental seq. overlap (%) 57.3%
Genomic Region Intergenic
Retrocopy Summary WHSC1L1P1, located on chr16:62688069-62690851, is a retrocopy of the parental gene NSD3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NSD3
Full Name N/A
Also known as WHSC1L1
Coordinate chr8:36288997-36398334
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens WHSC1L2P
Chimpanzee Pan troglodytes NSD3P1
Bonobo Pan paniscus NSD3P1
Gorilla Gorilla gorilla NSD3P1
Orangutan Pongo abelii NSD3P1
Gibbon Nomascus leucogenys NSD3P1
Crab-eating macaque Macaca fascicularis WHSC1L1P1
Rhesus Macaca mulatta NSD3P1
Baboon Papio anubis NSD3P1
Golden snub-nosed monkey Rhinopithecus roxellana NSD3P1
Marmoset Callithrix jacchus NSD3P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>WHSC1L1P1
ACGGCTGCCAGCACGGAGGCGGAGGCCCAGGGGCTGTGCACAGGTCGCCGCGGAGAGGCGTGCGATTTCCCAGCCGAGCGTCGAGGACCCTGCTGCCCAGGCCGGGCTGCAGACGTAGGCTCCTCTCTGGCGGCAGCGGGGGCGCGGCGACCCCCGTCTCTCGGCCTCCCCTTCGCACCCCACCTCCCGAGCCTTCCTCCTGCCGCAGCACGCCTGGCCTGGCCCGGCTGTGGCCGTCCTCAATCTCCGTGTCCCTCCTGTGATTGCATTGACACGGCCGGGGCGTTAGAACGGGACAAACTGAAGGCCTGATGAGAGAAAGGGAAAGTTAAGAATGCTGGAGCAGAACAATGGATTTCTCTTTCTCTTTCATGCGAGGGATCATGAGAAACACAGTTCATCAACCACCTCAATTCATTGACTCCACCAGCATCCATCAGGAGGATGCCTTTGATAACAACAGTGACATTGCTGAAAATGGTGGCCAGACACTATACGAAGCTACCTTGCAGCAAAGCTTTCAGTACTCACCTACAACACATCTTCCTTCACTCACAAATGGCTACCTACCATCAATCAACATGTATGAAACTCAAACCAAATACCAGTCGTATAATCGATATCCTAATGGGTCAGCCAATGGCTTTGGTGCAGTTACAAACTTTTAGCTCCACTGACTATTACCATTCAGAAATTCTAAACACAAGACCACATGAAATTCTAGAAAAACCTTCCCCTCCACAGCCACCACTCCCCTCCTTTAGTACCACAAACTGTGATTCCAAAGAAGACTGGCTCACCTGAAGTTAAACTAAAAATAACCAGAACTATCCAGAATGGCAGGGAATTGTTCAAATCTTCCCTTTGTGGAGACCTTTTAAATGAAGTATGGGCAAGTGAGCACATGAGAAGTCAAAGCATGAAAGCAGAAAAGAAAAGAGGAAAAAATCCAAAAAGCATGACTCATCAAGATCTGAAGAGTGCAAGTCACACAAAATCCCCAAATTAGAACCAGAGGAACAAAATAGACCAAATGAGAGGGTTGACACCATATCAGAAAAACCAAGGGAAGATCCAGTACTAAAAAAGGAAGCCCCAGTTCAGCCAATACTATCTTCTGTTCCAACAACAGAAGTGTCTACTGATGTTAAATTTCAGGTTGGTGATCTTGTGTGGTCCAAGGTGGGAACCTATCCGTGGTGACCTTGTATGGATTCAGGTGATCCCCAGCTTGAAGTTCATTTCAAAATTAACACAAGAGGTGCCCGAGAATATCATGTCCAGTGTTTTAGCAAACAGCCAGAGAGGGCGTGGGTTCATGAAAAATGGGTACAGGAGTATAAAGATCATAAGCAGTATGAAGAATTACTGGCTGAGGCAACCACATGAGCCAGCAATCACTCTGAGAAACAAAAGATTCGGAAACCCTGACCTCAGAGAGAACATGCTCAATGGGATTTTGGCATTGCCCATGCAGAGAAAGCATTGAAAATGACTTGAGAAGAAAGAATAGAACAGGATACTTTTATCTATATTGATAAACAACCTGAAGACGGCTTATCCCAAGCAAAAAAGAATGTTGGTGTTGTCTCCAAAGCCGAAGTTAAAAAAGACCTGATGACCAAGATCTGTGCTTTGTACTCAGCCAGAATAGACCAATGCAGGGGAGATGGCCTCCTCACTCTCAAGTACTGACATTCGAAGACACAGCCAGAGGCGGCGCATAAGTGTAGACGAGGAAGAGCCACCTCCTGGTAAAATAACCTGGAAAACTGTGGCAGCAAGGAAATCCTACCAGCTTCCATTACAATGCACAAAGGGAGCCTGGATTTGCAGAAGTGTAACATGTCTCCAGCTGTGAAAATTGAACAAGTGTTTGCTCTTCAGAATGCTACAGAGGATGGGAAATTAATCAATTTGTTTATTCAACAAAGGGAATTGGTAACAAAACAGAAGTAAGTGTCAAGGGGCAAGACAGGCTTATAATTTCTAGACCAAACCAGAGAAATGAAAAGCCAATGTAGAATATATCATCTCTTGAAGCAACATCTGGTTCTACAGGCTTAGCAGAAAAGAAGCAACAGAGAAGATCAATTAGAACTCGTTCTGAATCAGAGAAGTCCACTGAGGTTGTGTCAAAGAAGATAAAAAAGGAGCAGGTTGAAACAGTTCCTCAGGCTGCAGTGAAGACCAGATTACAGGAAGGGTGGGCAGACTGGGCAGTGCACGGCTCTGTCAGATTCAGTGACAGCTCTGTCTTCACAGCGGTTGAGGAAACTGTAGACTGACATTCCTATACAATTTCATCCCAGAAACTCCAGACTTGTAGTCTCCCTGCAAGATTTCTTTGTCTGTTGGCAGCTTGATAAACAGTTTCTTTGTTTTCGATTTTGATTTTGCCAATCATCATTATTGGCATTTTCCTGCCTGGTTTCTTCTTCAAGACACTGAACAATTGCTTTAACATTCAAATGA
>XM_007962207.1
gggggctttgtgcgcggcggcggcgggagcggcggcggcggcggccagcacggaggcggaggcCGAGGGTACTGTGCACAGGTCGCCGCGGAGAGGCGTGCGAATTCCGAGCCGAGCTCCGAGGACCCTGCTGTCCTGGCCGGGCCGCCAGCTGTAGGCTCCTCTCTGGCAGCAGCGGCGGCGCGGCGAccccatccctcggcctccccttccctccccaccTCCCGAGCCTTCCTCTTCCCGCAGCACgcccggcccggcccggccgtggccctcctcggtgccggccGCCATGGCAGAGGCGTCCGGCGCGGGGAAAATCTAGCCCGGGGATTTCATGCGGCCTAGCTCGGTTCCGCCTCCTCCCCGCGCGGCCCCGGCGGCTGCCCGCAGCCCAGCCCCACTCCGGGCCTCCGTGTCTCTCCTGTGATCGCACTGACACGGCCGGGGGGTTAGAATGGAACAAACTGAAGGCCCGATGAGAGAAAGGGAAAGTTAAGGATGCTGGAGCAGAACAATGGATTTCTCTTTCTCTTTCATGCAAGGGATCATGGGAAACACAATTCAGCAACCACCTCAACTCATTGACTCCGCCAACATCCGTCAGGAGGATGCCTTTGATAACAACAGTGACATTGCTGAAGATGGTGGCCAAACACCATATGAAGCTACCTTGCAGCAAGGCTTTCAGTACCCAGCTACAACAGAAGATCTTCCTCCACTCACAAATGGGTATCCATCATCAATCAGTGTGTATGAAACTCAAACCAAATACCAGTCATATAGTCAGTATCCTAATGGGTCAGCCAATGGCTTTGGTGCAGCTAGAAACTTTAGCCCCACTGACTATTACCATTCAGAAATTCCAAACACAAGACCACATGAAATTCTGGAAAAACCTTCCCCTCCACAGCCACCACCTCCTCCTTCGGTACCACAAACTGTGATTCCAAAGAAGACTGGCTCACCTGAAATTAAACTAAAAATAACCAAAACTATCCAGAATGGCAGGGAATTGTTTGAGTCTTCCCTTTGTGGAGACCTTTTAAATGAAGTACAGGCAAGTGAGCACACGAAGTCAAAGCATGAAAGCAGAAAAGAAAAGAGGAAAAAAAGCAACAAGCATGACTCATCGAGATCTGAAGAGCGCAAGTCACACAAAATCCCCAAATTAGAACCAGAGGAACAAAATAGACCAAATGAGAGGGTTGACACTGTATCAGAAAAACCAAGGGAAGATCCAGTACTAAAAGAGGAAGCCCCAGTTCAGCCAATACTATCTTCTGTTCCAACAACAGAAGTGTCCACTGGTGTTAAGTTTCAGGTTGGCGATCTTGTGTGGTCCAAGGTGGGAACCTATCCTTGGTGGCCTTGTATGGTTTCAAGTGATCCCCAGCTTGAGGTTCATACCAAAATTAACACAAGAGGTGCCCGAGAATATCATGTCCAGTTTTTTAGCAACCAGCCAGAAAGGGCATGGGTTCATGAAAAACGGGTACGGGAGTATAAAGGTCATAAACAGTATGAAGAATTACTGGCTGAGGCAACCAAACAAGCCAGCAATCACTCTGAGAAACAAAAGATTCGGAAACCCCGACCTCAGAGAGAACGTGCTCAGTGGGATATTGGTATTGCCCATGCAGAGAAAGCATTGAAAATGACTCGAGAAGAAAGGATAGAACAGTATACTTTTATCTATATTGATAAACAGCCTGAAGAGGCTTTATCCCAAGCAAAAAAGAATGTTGCCTCCAAAACCGAAGTTAAAAAAACCCGACGACCAAGATCTGTGCTGAATACTCAGCCAGAACAGACCAGTGCAGGGGAGGTGGCCTCCTCACTCTCAAGTACTGAAATTCGGAGACACAGCCAGAGGCGGCACACAAGTGCGGAAGAGGAAGAGCCACCTCCTGTTAAAATAGCCTGGAAAACTGCGGCAGCAAGGAAATCCTTACCAGCTTCCATTACGATGCACAAAGGGAGCCTGGATTTGCAGAAGTGTAACATGTCTCCAGTTGTGAAAATTGAACAAGTGTTTGCTCTTCAGAATGCTACAGGGGATGGGAAATTTATCGATCAATTTGTTTATTCAACAAAGGGAATTGGTAACAAAACAGAAATAAGTGTCAGGGGGCAAGACAGGCTTATAATTTCTACACCAAACCAGAGAAGTGAAAAGCCAACGCAGAGTATATCATCTCCTGAAGCAACATCTGGTTCTGCAGGCTCAGTAGAAAAGAAGCAACAGAGAAGATCAATTAGAACTCGTTCTGAATCAGAGAAATCCACTGAGGTTGTGCCAAAGAAGAAGATCAAAAAGGAGCAGGTTGAAACAGTTCCTCAGGCTACAGTGAAGACTGGATTACAGAAAGGGTCGGCGGACCGGGGAGTGCAGGGCTCTGTCAGATTCAGTGACAGCTCCGTCTCCGCAGCGATTGAGGAAACTGTGGACTGAGATTCCTGTACAATTTCATCCCAGAAACTCCAGACTTGTAGTCTCCATGCAAGATTTCTTTGTCGGCGGCTCGATAAACAGTTTCTTTGTTTTCGATTTTGATTTCGCCAATCATCATTATTGGCATTTTCCTGCCTGGTTTCTTCTTCAAGACTCTGAACAATTGCTTTTACAGTCAGATGATTTTTTTTTTCGGTTGGAGCTGGATGGGTACAGCTTAAATCATGGGTCCAGCCTAAAAACCACCATTTAACTTACACTGATCAATTTCAACATGGACTGTTTTTGGTTTTTTGTTTTTAAATAAAGCATCATTAATGCACATCTGCAGGGTTTTGCCAAACAGCCCAAACTGTATACATTACAATCATTAAAAGTTCTTATTTTTTTTTAATATTAGTGCCGTTATCATGGAGAACAGCATGACAGCTGTCTTTGGCAGTCTGTCATTTTTCTAGCATTTTCAGAAACTCATCGGAAATGGCGGTACCTGTGTTTCCCTTCGAAAGCCTCTCAGTACAGCACTCCTGTTCCTCTGTTAAAACTCCTTGTTAATCCAGTGATCTTTTAGGCCAAGGAAATATTTTGTGGTGGTGTTCTGGGTCCATACACCAGCAATGAAGGAGATAGATTTGTGTACTTGTGTTTTTTAATCAGCATTAACATGGGCAGGCACCCTCATTTATAGATGTCAGGAAACATTCAGTGAAAAACTTGTAGAATGGGATGTGATAACGAGGTTCCAGTAATCTGAGCAGTCTAACGAGGCCCACCTCCTCCACCACAGAACGTGGCTATGTTCCAAGTGCTACTCTCACTCAGCCTGTTGCGGATCTTCATGGCCTCAGGAGACTTGTTTCTCCATGGGCTCTTCTGGACTGCACACTTCCACCATAGCTTGCTGGGCTGATCTAGATGTCTGTTTGTTGTATGGAAATTTTGGGGGAAAAAAATCCAAAACACAAACTGTGGGTTGAAATATTAACCGTCTCCTTGGTTCCTTGGTATTCACCGTGCCTGATCTGCACATTTCATCGTGGCTGTTTCTGTATAGCCTATACTGCATTAGCCCAAGAGATTGTTGCTTTGTAACTTTTTGCACTATTGTTTTGGCTGGATTTGTATTACACACAGTTTTAAAAAAAAAATTCCACACTATTCTCTGCCTTTTTTTTCCTATTTATTTCTTCCCGCACAAATTCCACATAGAGGCCTTCCCATCCAGCTCTACGTGATTTGGCTGCACTTGAACACTGTCCATTTACAACCCTCAGCAATGTGCCTCCTAAATGGCATGACATATGTAGATGTGCTGCAGCGCTTGTTAATGGTCACAATAAATGCCACTTCACCAAGGAAGTCTCAGATGAACAATTAAGAACATCCAAATTTTATTGGGGGGCAATAATCAACTGAATTGCAAAATTCAGGGGAAAATGGCACTATCCGTGTACGAATCGAATACAAATCAAAGATTTGTCACATCCCTAATAAAAACAAGATGGAGA

Publications

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