Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ARPC1AP3
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr20:7777038-7778211  UCSC
Strand +
Parental Sequence XM_031665592.1
Parental seq. overlap 1093 bp
Parental seq. overlap (%) 58.8%
Genomic Region Intergenic
Retrocopy Summary ARPC1AP3, located on chr20:7777038-7778211, is a retrocopy of the parental gene ARPC1A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ARPC1A
Full Name N/A
Also known as -
Coordinate chr4:140663971-140704617
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ARPC1AP3
Chimpanzee Pan troglodytes ARPC1AP3
Bonobo Pan paniscus ARPC1AP3
Gorilla Gorilla gorilla ARPC1AP3
Orangutan Pongo abelii ARPC1AP3
Gibbon Nomascus leucogenys ARPC1AP2
Green monkey Chlorocebus sabaeus LOC103246791P2
Crab-eating macaque Macaca fascicularis ARPC1AP3
Rhesus Macaca mulatta ARPC1AP3
Golden snub-nosed monkey Rhinopithecus roxellana ARPC1AP3
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ARPC1AP3
TGAATTCTCTGCTCTGAGCCCATCCGGACTTCCCCAATCCCAGCTTTCTCTCCTTTGAAAACACTAAGACTAATGTCACTGCATTGGTTTTTACTTGAGTCAATTACCTGTCATGCCTGGAACAGGGATCGTACCCAGATTGCCCTTAGTCAAAATAATCACGAAGTGCACATCTATAAGAAGTACGGGAGCCAGTGGGTGAAAGCTTATGAACTCAGTGAGCACAATGGACACATCACAGGTATTGACTGGGTTCCCAAGAGCAACCGCATCGTCACTTATGGGGTAGACCGCGATGCCTATGTCTGGAGTCAAAAAGATGGTGCCTGGAAACCAACCCTGATGATCCTGAGAATTAATCATGCAGCTGCTTTTGTGAAGTGGTCCCCCCTAGAGAACAAATTTGCTGTGGGAAGTGGAGCACGACTCATTTCTGTTTGTTGAGTTCGAAATGACTGGTGAGCGAGCAAGCACATTAAAAAGCCGATACGCTCCACAATCCTCAGCTTGGACTGGCATCCCAACAACGTTTTGCTGGCAGCAGGATCATGTGACTTCAAATGCAGAGTGTTTTCTGCCTACATTAAAGAAGTGGATGAGAAGCCAGTCAGCATGCCCTGGGGCAGCAAGATGCCTTTTGGGCAGCTGATGTCAGAGTTTGGTGGCAGTGGCACTGGTGGCTGGGTGCACGGGGTAAGCTTCTCTGCCAGTAGGAGCCGCCTGGCCTGGGTCAGCCACGACAGCACTGTGTCTGTTGCTGATGCCTCCAAAAGTGTGCAGGTCTCAACTCTGAGGACGGAGTTCCTGCTGCTCCTGAGTGTGTCATTGGTCTCGGACAACAACGTCGTGGCTGCTGGCCATGTCTGCCGCCCAGTGCTCTTTAACTATGATGACCATGGCTGCCCGACCTTCATCTCCAAGTTAGACATTCCAAAACAGCATCCAACGCAACACGTCTGCCATGGAACGCTTCCGCAACATGGACAAGAGGGCCACGACTGAGGACAGCAACATGGCCTTGGAGACTCCGCACCAGGATAGCATCACTCAAGTCTCTATTTATGAGGTGGACAAGCAAGATTGTCGCAAATTTTGCACTACTGGCATTGATGAAGCCATGACAATTTGGGATTTCAAGACCCTCGAGTTTTCCATCCAGGTCCTCCGGATAATG
>XM_031665592.1
CGGGATCTGTCAGCCGCTCCCTCTGGGCTTCCGTCCTCCGCCCGCGCCCGCCGGAGCCTGTTCGCGTCGACTGCCCAGAGTCCGCGAATCCTCCGCTCCGAGCTCGTCCGGACTCCCCCGATCCCAGCTTTCTCTCCTTTGAAAACACTAAGAATAATGTCACTGCATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGGGATCGTACTCAGATTGCCCTCAGTCCCAATAATCACGAAGTGCACATCTACAAGAAGAACGGAAGCCAGTGGGTGAAAGCTCATGAACTCAAGGAGCACAATGGACACATCACAGGTATTGACTGGGCTCCCAAGAGCGATCGCATCGTCACTTGTGGAGCAGACCGCAATGCCTATGTCTGGAGTCAGAAAGATGGTGTCTGGAAGCCAACCCTGGTGATCCTGAGAATTAATCGCGCAGCTACTTTTGTGAAGTGGTCCCCCCTAGAGAACAAATTTGCTGTGGGAAGTGGAGCACGActcatttctgtttgttacttTGAGTCTGAAAATGACTGGTGGGTGAGCAAGCACATTAAAAAGCCGATTCGCTCCACAGTCCTCAGCTTGGATTGGCATCCCAACAACGTTTTGCTGGCAGCAGGATCATGTGACTTCAAATGCAGAGTGTTTTCTGCCTACATTAAAGAAGTGGATGAAAAGCCAGCCAGCACGCCCTGGGGCAGCAAGATGCCTTTTGGGCAGCTGATGTCAGAGTTTGGTGGCAGTGGCACTGGTGGCTGGGTCCACGGGGTCAGCTTCTCTGCCAGTGGGAGCCGCCTGGCCTGGGTCAGCCACGACAGCACCGTGTCTGTTGCTGATGCCTCAAAAAGTGTGCAGGTCTCAACTCTGAAGACGGAGTTCCTGCCGCTCCTGAGTGTGTCATTTGTCTCAGAGAACAGCGTCGTGGCTGCTGGCCATGACTGCTGCCCAATGCTCTTCAACTACGATGACCGCGGCTGCCTGACCTTCGTCTCCAAGTTAGACATTCCAAAACAGAGCATCCAGCGCAACATGTCTGCCATGGAACGCTTCCGCAACATGGACAAGAGAGCCACGACTGAGGACCGCAACACGGCCTTGGAGACGCTGCACCAGAATAGCATCACtCAAGTCTCTATTTATGAGGTGGACAAGCAAGACTGTCGCAAATTTTGCACTACTGGCATCGATGGAGCCATGACAATTTGGGATTTCAAGACCCTCGAGTCTTCCATCCAGGGCCTCCGGATAATGTGAAGCTGAGTGAGCCTCCGCCATCCAGCATGACAAACTGTGGCCGACCGCAGCTGTGCCGTGGCACGATGGCGAGGAAGCCAGCCCCAAGGAAACACTGAAAACATATCACGCCAATGCCGTGTGGTTTTGTTTGAATATAAAATTGGTGAAAGTGTTggtttttttaaagcagtaatttttttgtttttgtttttttgcgaTTTCATTCCATTCTTGACCAAAGCTTCTCTTTAAGTAGTTTATTATGGAAAACTGTCACACTAACTTAAAAGACAGGGTGAGGGAGATATGTGAATTGTCcactagaaaattaaataaaggaactgaatgtggttttggttttgtttccttgtAGTATTTCAATTTTTAGTAGGAAAATATGAGTGAATTCTTCATTCAATTAGGTTTGTTTTAGGCAAAATCGTAGATCCTTGGTTTCTTAAATTGCACCATTCTATACAACCTTGAACCAAAAAGCAGCATTTAGTGGGGGGTGAGAGAGAACCATTTCTGAACGTTGCAATACTTCTGCAAAGCAGGTGTTGttggtctgttttgtgttgcaataaaggaatacctgagactgggtaa

Publications

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