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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ATP5MGP8
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr17:67803516-67803699  UCSC
Strand -
Parental Sequence XM_003910781.4
Parental seq. overlap 160 bp
Parental seq. overlap (%) 23.3%
Genomic Region Intragenic (RNF157)
Retrocopy Summary ATP5MGP8, located on chr17:67803516-67803699, is a retrocopy of the parental gene ATP5MG. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ATP5MG
Full Name N/A
Also known as ATP5L
Coordinate chr12:16145534-16153599
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ATP5MGP6
Chimpanzee Pan troglodytes ATP5MGP10
Bonobo Pan paniscus ATP5MGP10
Gorilla Gorilla gorilla ATP5MGP5
Orangutan Pongo abelii ATP5MGP9
Gibbon Nomascus leucogenys ATP5MGP8
Green monkey Chlorocebus sabaeus ATP5LP8
Crab-eating macaque Macaca fascicularis ATP5LP9
Rhesus Macaca mulatta ATP5MGP8
Golden snub-nosed monkey Rhinopithecus roxellana ATP5MGP11
Marmoset Callithrix jacchus ATP5MGP6
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ATP5MGP8
AGCTCACAGTTAAGGAAGCTTTGCTGAATGATGTGGTGGCCACTGAGGTGTGGACGTGATTTTATGTCAGAGAGCTCATAGACAAGTGTGGCATCATTGCTGTAACCTTTGAAGACCCATCTTTAACATCTGATTTCATCTGATTTATGACTTGTGTGTTCTTGGACCATGTGTGATCAGACTA
>XM_003910781.4
CTGCCCAACAAAATGCCTGCTTCTCTGCGGAATCCCGCTGTTCTTCACATGCTCTCTAATATCATCTTTTCATATCCACTTTCTCTTCCATGTTGAAAAAAGTAAGTGGACAGACTGGATTCTGCAAAGATCTTTGGACATTTAAATATCCTCGACCGGCGCGAAAAGAGGCGGCCTGACCTTGGAAGTGGGACGGGGTCCTGCAAAGGGTCCTTCCGGCGGGTGACATTCAGCCGGCCGTTCAGGGCGACGGACTTAGCATCGCAGAACCATGGCCCAATTTGTCCGTAACCTTGTGGAGAAGACCCCGGCTCTGGTGAACGctgCTGTGACTTACTCGAAGCCTCGATTGGCCACATTTTGGTACTACGCCAAGGTTGAGCTGGTTCCTCCCACCCCTGCTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTCAATAGTGCTCAGACTGGTAGCTTCAAACAGCTCACAGTTAAGGAAGCTGTGCTGAATGGTGTGGTGGCCACTGAGGTGTTGATGTGGTTTTATGTTGGAGAGATCATAGGCAAGCGTGGCATCATTGGCTATGATGTTTGAAGACCAATCTTTAACATCTGgttatatttgatttattatttgagTGTTGTTGGACCATGTGTGATCAGACTGCTATctgaataaaataagatttgtcaaaactca

Publications

PMID - Link Title