Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name DDX50P3
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr14:32031901-32033487  UCSC
Strand +
Parental Sequence XM_031652238.1
Parental seq. overlap 1510 bp
Parental seq. overlap (%) 61.1%
Genomic Region Intragenic (SLC30A6)
Retrocopy Summary DDX50P3, located on chr14:32031901-32033487, is a retrocopy of the parental gene DDX50. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DDX50
Full Name N/A
Also known as -
Coordinate chr11:65365150-65398315
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens DDX50P1
Chimpanzee Pan troglodytes DDX50P1
Bonobo Pan paniscus DDX50P1
Gorilla Gorilla gorilla DDX50P1
Orangutan Pongo abelii DDX50P1
Gibbon Nomascus leucogenys DDX50P3
Green monkey Chlorocebus sabaeus DDX50P2
Crab-eating macaque Macaca fascicularis DDX50P3
Rhesus Macaca mulatta DDX50P3
Golden snub-nosed monkey Rhinopithecus roxellana DDX50P4
Marmoset Callithrix jacchus DDX50P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DDX50P3
tccgATTGGATCTTTCTAAACTGTGCCACGTTGTGCTTGATAAGTGGATCAAATGTTAGATTTAGGTTTTGCTGAACAAGTTGAAGATATTATTCATGAATCCTACAAAACTGATTCTGAAGACAATCCTCAGACTTTACTTTTTTCTGCAGCTTGCCGACAGTGAGTATACAAAGTTGCAAAAAAATGCATGAAATCCAGATACGAACAGGTTGACCTTGTTAGAAAAATGACTCAAAAGGCTGCAGCTACTGTGGAACATTTGGCCATCCAGTGTCATTGCTCTCAGAGGCCAGCAGTTATTGGAGATGTCCTTCAAGTCTGCAGTGGGTCTGAAGGGAGGGCTATTATTTTCTGTGAGACCAAAAGGAATGTAACTGAAATGGCCATGAATCCACACATAAAACAGAATGCCCAGTGTTTACATGGGGACATTGCACAGTCACAAAGAGAAATTATACTAAAAGGCTTCGGAGAAGGTAGTTTTAAAGTTTTGGTGGCAACCAATGTGGCTGCCCGTGGTTTGGACATTCCTGAAGTTGACCTGGTGATTCAAAGTTCTTCTCAGAATATTGAGTCCTATATCCATCATTCTGGACGCACAGGTAGAGCTGGACGGACAGggatttgtatatgtttttatcCACCAAGAGAAAGAGGTCAACTAAGATATGTGGAACAAAAAGCAGGAATTACTTTTAAATGTGTAGCTGTTCCTTCTACAATTTATTTAGTTAAGTCTAAAAGCATGGATGCCATAAGCTCTCTGGCTTCCTTTTTTTATGCTGCTGTTGATTTTTTCCAACCATCAGCTCAGATACTGATAGAAGAGAAAGGGGCAGTGGATGCCTTGGCTGCAGCTTTGGCCCACATTTCTGGTGCATCAAGCTTTGAACCACGATCTTTGATCACCTCTGATAAGGGATTTGTGACCATGAATCTGGAAAGCCTAGAGGAAATACAAGATGTCAGCTGTGCTTGAAAAGAACTTAACAGAAAGCTGAGTAGTAATGCAGTGTCTCAGATTACCAGAATGTGCCTCCTGAAAGGAAATGTGGGTGTTTGCTTTGGTGTTCCTACAACTAAGTCAGAAAGGTTACAGGCAGAGTGGCATGATTCCGACTGGATACTCTCAGTGCCAGCCAAATTACCTGAAATTGAAGATTATTATGATGGAAACACATCCTCTAATTCCAGACAGAGGAGTTGCTGGTCAAATGGCCAGTTGGGCTGGTCAAGTGGTTGATCTGGCAGCCGGTCAGGTAGACAGAGTGGACAAAGGAGTCGCTCAGGAAGTCGACAAGGTGGTAAAAGATGAAGTGGGAATAGAAATCGATCAAGAAGTGGGAGCTACAAACAGAGTTTTCACTATTTGATGGTTAATCTACCAGTATGAGCTTGCCTATTTCTGCCTAATCATGTACATTATCCACCAAAAATTAGGTCATCATAGTTGAGGTATGTGTCTACTATTTGCAAAGAAATtggtcatatttttttaaaaagtatttcacaaGAATGATTGTAAACAAATCTACTTATCCAGTTATACCTTTGAATTTAAAAACCTCCTTttattgtctcttt
>XM_031652238.1
caggcgtgagcctccacacctggccccaaagcTGCCTTAAAAAACTTTTGTATTAGAAAGATGTTACTGGAGATTCCAGCTCCACCATTTCTAGGTGTTTGATTTTGGGCAACACTTTAATTCTCTGAGACACGAGTCTGTCATTTATGAAAATGGTGTAATAATGCCACTCATGGGTTTTTATGAGAATCAAATTAGATAATTCCTGTAAAGCATTAGTTCCTAGCACATGGTGAACATTCATTCGTTTATCAAACATTTTTGAGTTTCCTGtactgtaccaggcactgtttgaAGTGCAAGGAATACAGTAACCCAACCTGACATAaattcctgccttcatggagcttacattttatcGGGTGAGATAGACAATcgcaaataagtaaaatatcagTATCTTGGGTGGTGTAAGTGCTGAGCAGAAATAATAAAGGGGCAGGAGGATATGAAAATGGGCTTGGAAACCTTACtgaagagacctgaaggaagtaaGGGaggatataataaatatacaccGCTGTTCTTGTTGCTATTTGTGTTGTATCTTTAAATACTATGACATTAATGTAGAGTTTCCTGGTTTTAAATGCACCTACAAAAAGTCTTCTCGGTTTTAATTCATATATgtctttagaaaaatatctttttgttttttaaacctcTTGCTCAGGTACTTGTTTTGGCTCCAACAAGGGAACTGGCAAACCAAGTAGCCAAAGACTTCAAAGATATAACTAGGAAACTCAGTGTGGCGTGTTTTTATGGTGGAACATCATATCAAAGCCAAATTAATCATATTCGAAATGGTATCGACATCTTGGTTGGAACCCCTGGTCGTATCAAAGACCATCTGCAGAGTGGCCGATTGGATCTTTCTAAACTGCGACATGTTGTGCTTGATGAAGTGGATCAAATGTTAGATTTAGGTTTTGCTGAACAAGTTGAAGATATTATTCACGAATCCTACAAAACTGATTCTGAAGACAATCCTCAGACTTTACTTTTTTCTGCAACTTGCCCACAGTGGGTATACAAAGTtgcaaaaaaatacatgaaatccAGATATGAGCAGGTTGACCTTGTTGGAAAAATGACTCAAAAGGCTGCAACTACTGTGGAAcaTTTGGCCATCCAGTGTCATTGGTCTCAGAGGCCGGCAGTTATTGGAGATGTCCTTCAAGTCTACAGTGGGTCTGAAGGGAGGGCTATTATTTTCTGTGAGACCAAAAAGAATGTAACTGAAATGGCCATGAATCCACACATAAAACAGAATGCCCAGTGTTTACATGGGGACATTGCACAGTCACAAAGAGAAATTACACTAAAGGGCTTCAGAGAAGGTAGTTTTAAAGTTTTGGTGGCAACCAATGTGGCTGCCCGTGGTTTGGACATTCCTGAAGTTGACCTGGTGATTCAAAGTTCTCCTCCTCAGGATGTTGAGTCCTATATCCATCGCTCTGGACGCACAGGTAGAGCTGGACGGACAGggatttgtatatgtttttatcAACCAAGAGAAAGAGGTCAACTAAGATATGTGGAACAAAAAGCAGGAATTACTTTTAAACGTGTAGGTGTTCCTTCTACAATGGATTTAGTTAAATCTAAAAGCATGGATGCCATCAGGTCTCTGGCTTCCGTTTCTTATGCTGCTGTTGATTTTTTCCGACCATCAGCTCAGAGACTGATAGAAGAGAAAGGGGCAGTGGATGCATTGGCTGCAGCTTTAGCCCACATTTCTGGTGCATCAAGCTTCGAACCACGATCTTTGATCACCTCTGATAAGGGATTTGTGACCATGACTCTGGAAAGCCTAGAGGAAATACAGGATGTCAGCTGTGCTTGGAAAGAACTTAACAGAAAGCTGAGTAGTAATGCAGTGTCTCAGATTACCAGAATGTGCCTCCTGAAAGGAAATATGggTGTTTGCTTTGATGTTCCCACAACTGAGTCAGAAAGGttacagGCAGAGTGGCATGATTCCGACTGGATACTCTCAGTGCCAGCCAAATTACCTGAAATTGAAGAATATTATGATGGAAACACATCTTCTAATTCCAGACAGAGGAGTGGCTGGTCAAGTGGTCGATCGGGCCGGTCAGGCCGGTCAGGTGGTCGATCTGGTGGCCGGTCAGGTAGACAGAGTCGACAAGGGAGTCGCTCAGGAAGTCGACAAGATGGTAGAAGACGAAGTGGGAATAGGAATCGATCAAGAAGTGGGGGCCACAAACGGAGTTTTGACTGAGTATTTGATAGTTAATCTACCAGTGTGAGCTTGCCTATTTCTGCCTAATCATGTACATTATCCACCAAAAATTAGGTCATCATAGTTGAGGTATGTGTCTGCTATTTGCAAAGAAGTTGGtcgtatttttttaaaaagtatttcacaaGAATGGTTGTAAACAAATCTACTTATCCAGTTATACCTTTGAATAAAAAAACCTCCTTTTATTGTCTCTTTTCA

Publications

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