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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL38P2
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr2:50901393-50901636  UCSC
Strand -
Parental Sequence XM_005584834.1
Parental seq. overlap 210 bp
Parental seq. overlap (%) 54.5%
Genomic Region Intergenic
Retrocopy Summary RPL38P2, located on chr2:50901393-50901636, is a retrocopy of the parental gene RPL38. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL38
Full Name N/A
Also known as -
Coordinate chr16:71427169-71433266
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL38P1
Chimpanzee Pan troglodytes RPL38P4
Bonobo Pan paniscus RPL38P3
Gorilla Gorilla gorilla RPL38P4
Orangutan Pongo abelii RPL38P3
Gibbon Nomascus leucogenys LOC100605420P7
Green monkey Chlorocebus sabaeus RPL38P6
Rhesus Macaca mulatta RPL38P2
Baboon Papio anubis RPL38P1
Golden snub-nosed monkey Rhinopithecus roxellana RPL38P1
Marmoset Callithrix jacchus RPL38P13
Mouse lemur Microcebus murinus RPL38P1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL38P2
GCCATGCCTCAAAAAGTTAAGGAAATCAAGGACTTTCTGCTTATAGCCAGGTGAAAGGATGCCAGATCTGTCAAAGTCAAGAAAAATAAGGATAATGTGAAGTTTAAAGTTTGATGCAGCAGATACCTTCATACATTAGTCATCACAGACAAAGAGAAGGCAGAGAAACTGAAGCAGTTCTGGTACCCTGGTTTGTTAGAGAAGAAGATGAAATCAGACACACTGATTTGAACTGTGTTAAAAA
>XM_005584834.1
TCGTTCTTTTACTAGGTCGCTGCTGGCTGTGAGTGTCTCTAGAGTGGTACGCGGGTGAGAAGGGTAATCTGGGGCAATCCACGGCCAGGTCCCGGTCCGCGCCAGCTCCCTGCGCGCCTTGTCGCCATGCCTCGGAAAATTGAGGAAATCAAGGACTTTCTGCTCACAGCCCGACGAAAGGATGCCAAATCTGTCAAGATCAAGAAAAATAAGGACAATGTGAAGTTTAAAGTTCGATGCAGCAGATACCTTTACACCCTGGTCATCACTGACAAAGAGAAGGCAGAGAAACTGAAGCAGTCCCTGCCCCCTGGTTTGGCAGTGAAGGAACTGAAATGAACCAGACACACTGATTTGAAGTGTATTAAAATACTAAAAATCCTAA

Publications

PMID - Link Title