Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FERP1
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Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Papio anubis
Coordinates chrX:30823361-30824136  UCSC
Strand -
Parental Sequence XM_017960295.3
Parental seq. overlap 690 bp
Parental seq. overlap (%) 14.3%
Genomic Region Intragenic (THOC2)
Retrocopy Summary FERP1, located on chrX:30823361-30824136, is a retrocopy of the parental gene FER. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FER
Full Name N/A
Also known as -
Coordinate chr5:101616660-102064801
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FERP1
Chimpanzee Pan troglodytes FERP1
Bonobo Pan paniscus FERP1
Gorilla Gorilla gorilla FERP1
Orangutan Pongo abelii FERP1
Gibbon Nomascus leucogenys FERP1
Crab-eating macaque Macaca fascicularis FERP1
Rhesus Macaca mulatta FERP1
Golden snub-nosed monkey Rhinopithecus roxellana FERP1
Marmoset Callithrix jacchus FERP1
Mouse lemur Microcebus murinus FERP1
Chinese hamster Cricetulus griseus Fer_1P1
Rabbit Oryctolagus cuniculus FERP1
Pig Sus scrofa FERP1
Cow Bos taurus FERP3
Sheep Ovis aries FERP3
Dolphin Tursiops truncatus FERP1
Horse Equus caballus FERP1
Dog Canis familiaris FERP1
Panda Ailuropoda melanoleuca FERP1
Cat Felis catus FERP1
Pale spear-nosed bat Phyllostomus discolor FERP2
Velvety free-tailed bat Molossus molossus FERP1
Greater mouse-eared bat Myotis myotis FERP3
Kuhl's pipistrelle Pipistrellus kuhlii FERP2
Greater horseshoe bat Rhinolophus ferrumequinum FERP1
Egyptian rousette Rousettus aegyptiacus FERP1
Sloth Choloepus didactylus FERP2
Green monkey Chlorocebus sabaeus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FERP1
AAGAAATGGGCTCTCAATCATAAAGGTGTCACATTACAAGAATTACTTGGCAAGGGACATTTTGGTGACACATTTAAGGGCACATTAAAGGATAAAATTGCTGTTGCTGTTAAAATATGTCAAGAACATCTTCCCCaggaactgaaattaaaatttttactagAAGCCAAAATCCTCAAGCAATATAATCATCCCAGTACTGTCAAACGTATAGGAGTTCGCACACAAAGACGGCCTATCTACATCATTAAGGAACTGGTTCCAGGAGGCGATTTCCTCTCCTTtctgagaaagaagaatgaaCTAAAACTCAGTTAGTGAAATTTTCATTAGATGCTGATTCTGGATGGCGTATCTCGagtaaaaaatgtatacacaggGACCTTGCTGCAAGAAACTGCCTGGAGGTGAAAATAATGTTCTGAAAATCAGTGACTTTGGAATGTCTCGTCAAGAGGATGGTGGTGTGTATTCATCTTCTGACTTAAAGCAGATTCCCATTAAATGGACAGCACCAGAAGCTCTTAATTATGGGATATATCGTTCTGAGAGTGACGCACGGAGCTTTGGCATCCTCCTCTGGGAGACTTTCAGCTTAGGGGGTCTGTCCATAGCCTGGAATGACAAATCAGCAAGCACAAGAGCAAGTGGAAAGAAGATACTGGATGTCAGTCTCTTGGCAGTGTCCAgagaatattttaacaaaataatgctGAGGTGTTAGGATTACAAACTTGAAAACCGCCCCCAACTTTACTGAACTTCAGAAAGAGCTA
>XM_017960295.3
agtgctgggattacaggcttgagccaccgcgcccggccccacattATTATGTTCATTTGTCCAGTAAGTAATGCTATTGGAACAAAGTTTGGTATTTGAGAACATGGAATATATACTAAGGTGACACAAAGTGTTTATTAAATGTGTTGCAATGCAATGTGATTATTCCAACAGAGGGAAAAACGTGAAACTGGATttgctatatatttttgtttgcttcaaaAATGCAGCATAGATTTTTGTCACATTCATTTACTTCAAGTACATTCTCTCACAACTGCATTTCCTAGCACAATGACTGGCATATGGTAGACAACTTTTAAGGTTTTGGAATGAATCGGTAAGAACTCAGAGAACAATTGTAGATATGGAAAGATTCTTACTGTTTTTCTAGATTTGAGTTccttaaaaacacaaacacacacatgttgTGTATCTAACAGCTCTATTTCTACCATACCTTTATTGAAAGCTACTTTCTGCAATTATGTAATAACTTATTCACCATCCACATCTTTCTACATTTTGATTCCCTTTGTATAGAGATGGAGAAAATCCTAAGGCTCTTGGGAAAGGTATTCAGTCATGAAGCAATCTCCAAAGTTGTATTTTGGCATTACCTAACTAATGCacaaattttcattcatttcattcttaTTGATATTACGTATACTATAACATTTAATGTTCACAGAAAAGTAACTTCTATTTTAAGAAGTTTACTCACAGAACCATAGTTTGTGCATTTAACAGTCACTATGAAATATATATCAAACATTAACCATCATTTTagagaacaatttaaaaactcTGAAGTAATTACTTTCCTTAACTTTGTCATCCCAACATTCTGGGTATAGGCATTGTTGGAAAAATATACAAACCAAAATCTCCCAACCCAGAAATCCTCTCCACAAACGTTAGTAGACAAAAcccttttattattgaataagcaTTAAACCAGACTGTGATGCACATCACAGGCAACTTGCTAAGAGATTGCAAAGACAGAAATCTCGCCCTTTTATATAGCCAAGTATATACAACCCATTACATACACGTTTTCAAGATGAACAGTAACTAGTCCTCAAGTAAGAGGACCTGACATTTGTGTCAGATATAATTCATCTTTACTTAGTAGTTGGGGTGACCATCTGTGTTAGTTAATTGGTTTTATccagaggaaaaacaaacttCTCCTGTCTTTATGAAGGAAGGTAATTTTGCAACATGGAGCAAGTTGCTCACCGAAGTTAGGCTCCAACGCTCTCACGGAAACTGGGAGATAGGGAGGGATGCTACTCCCTTGATATgtgcagcatttaaaaaaaaaaaaaaaagaaaaagaaaaagagaaagaaagaaaaaaaaggaagtaaagaaaaaaagcttcCAGGTTCCAGAGACATTCCTGATCCTAAAGTTGACAAGACCTATCTAGTCCTCAAATGGATTTATACACATTTCAAAGAGTTGAGAAAGTACTTAACAATTAAGAAAGTACTTTAGTTTTCTAAGACAAATGCTCGGAGAAAAAGGGACAGGAAATCTCATCCCCTATTTTCAACAGGGAGAATTAAacctcttatttaaaatttttatgttggtttttgtttctttagcttTAAAACAGTAGACTTAAAAAAAAGTCCAACTAAAGATTTATGTTTTCCTATGTGTAGGGCTGTTCTCTGTGGTTAAATAAATAACCCTGCTTAGAGAAAATATTCACCACTCTTCTTTGGCTCCTACATAACTCAGTTTTTGAGAGGGAGGGGAAATACGGCATTGACGCTATGTGGTTTAACCAATGCAAAAGATACACCGCCTTAAAAAGCCTACTACAGGAACATGGGAGGGTCACACCCTGAATAATGACGAATACCTATCCTACTGTTACTGATCACCTAGTAATAATCTTGTAGTTCACATTACTCATTTTTCACCAAATTCTTTTGGTGAAGGACGCTTCAGAAACGGCCATTACTGAAGAGCAGACCCATCTGGGTTCTCCACGCATTCTAGACTCCCGAAGAGCTCATGGTTTTTGGCTAGACCTGTGATCATTTTCGCTGGACTTCACTGCACGCTTTCTCAGTATCTCCTTCGTCCCTAATGTGTGACACCTCATCATGGACATGCTACTTTAGCTAAGGCATGGCCAGCAATGAACAGCAGTAAGATAATGTGCTGATTAGAAGGCTCACTTGTGCAGTGTGGAGGATAACCAGTGCCTTACAAAATGGGATTTGGGAGTGACCTGAAGAATTCACATGAAGCAGTGTTAAAATTGCAAGACTGGGAATTACGGTTACTGGAAACAGTAAAGAAATTTATGGCCCTGagaataaaaagtgataaagaatATGCATCTACTTTACAGAACCTTTGTAATCAAGTTGATAAGGAAAGTACTGTCCAAATGAATTATGTCAGCAATGTATCCAAGtcttggCTACTTATGATTCAGCAGACAGAACAACTTAGTAGGATAATGAAGACACATGCAGAGGACTTGAACTCTGGACCTTTACACAGGCTCACCATGATGATTAAGGACAAGCAGCAGGTGAAGAAAAGTTACTTAGGTGTTCATCAGCAGATAGAGGCAGAGATGATCAAGGTTACAAAAACAGAATTGGAGAAGTTAAAATCCAGCTATAGacaattaataaaagaaatgaattctgccaaagagaaatataaagaagCTTTAGCTAAAGggaaggAAACTGAAAAGGCCAAGGAACGATACGATAAAGCGACAATGAAACTTCATATGTTGCACAATCAGTATGTATTGGCGTTGAAAGGGGCACAGCTCCATCAGAATCAGTATTATGATATCACACTTCCCCTGCTTCTGGACTCCTTACAAAAGATGcaagaagaaatgataaaagcactcaaAGGTATATTTGATGAATACAGCCAGATAACCAGTCTTGTCACAGAGGAGATAGTGAATGTCCATAAAGAGATTCAAATGTCGGTTGAACAGATAGATCCTAGTACAGAATACAATAATTTCATAGATGTTCACAGAACAACGGCTGATAAAGAACAAGAAATAGAGTTTGATACTTCCttattggaagaaaatgaaaatcttcaGGCAAATGAGATCATGTGGAATAATTTAACAGCAGAAAGTTTGCAAGTAATGTTGAAAACCTTAGCAGAAGAACTTATGCAAACACAGCAGATGCTTTTAAACAAGGAGGAGGCTGTTTTGGAGTTAGAGAAGAGAATTGAAGAATCTTCCGAGACTTGTGAGAAGAAATCTGAtATTGTGCTTCTGCTAAGCCAAAAACAGGCACTTGAAGAACTGAAGCAGTCAGTCCAGCAGCTGAGATGCACTGAAGCAAAGTTTTCAGTACAGAAGGAATTACTAGAGCAAAAAGTGCAAGAAAATGATGGGAAAGAGCGCACCTGGCTCATGTAGTAACCCAGCACTTATGAAGAAGATGCACGATCAGTTACATCTATGgaaagaaaggagaggctATCCAAATTTGAATCTATTCGTCATTCAATTGCTGGAATAATTAGGTCTCCAAAATCCGCACTGAGCTCTTCAGCAcTTTCTGATATGATCTCCATCAGTGAGAAGCCTTTGGCAGAACAGGACTGGTACCATGGTGCAATTCCCAGAATAGAAGCTCAAGAACTGTTAAAAAAACAAGGAGACTTTTTGGTGCGAGAGAGTCATGGGAAACCTGGTGAATATGTCCTTTCTGTATATTCTGATGGACAGAGGAGACATTTTATCATACAATATGTTGATAACATGTATCGATTCGAGGGCACTGGATTTTCAAACATTCCTCAACTTATAGATCATCACTATACAACGAAACAGGTCATCACTAAGAAATCGGGTGTAGTTCTGCTGAATCCTATTCCTAAGGACAAGAAATGGATTCTCAGTCATGAAGATGTCACATTGGGAGAATTACTGGGCAAGgGAAATTTTGGTGAAGTATATAAGGGCACATTAAAGGATAAAACTTCTGTTGCTGTTAAAACATGTAAAGAAGATCTTCCTcaggaattgaaaataaaatttttacaagAAGCCAAAATTCTCAAGCAATATGATCATCCCAATATTGTCAAACTTATAGGAGTTTGCACACAAAGACAGCCTGTCTACATCATTATGGAACTGGTTTCAGGAGGTGATTTCCTCACCTttctgagaaggaagaaggatgAACTAAAACTCAAACAGTTAGTGAAATTTTCATTAGACGCTGCTGCTGGTATGTTGTATCTCGAGAGTAAAAACTGTATACACAGGGACCTTGCTGCAAGAAACTGCCTGGTGGGTGAAAATAATGTTCTGAAAATCAGTGACTTTGGAATGTCTCGTCAAGAGGATGGTGGAGTGTATTCATCTTCTGGCTTAAAGCAGATTCCCATTAAATGGACAGCACCAGAAGCTCTTAATTATGGGAGATACAGTTCGGAGAGTGACGTGTGGAGCTTTGGCATCCTTCTCTGGGAGACCTTCAGCTTAGGGGTTTGTCCGTACCCTGGAATGACAAATCAACAAGCAAGAGAGCAAGTAGAAAGAGGATACCGGATGTCAGCTCCCCAGAACTGTCcagaggatatttttaaaatcatgatgaagtgttgggattataaacCTGAAAATCGCCCTAAGTTCAGTGAACTTCAGAAAGAGCTCACTATCATCAAGAAAAAACTCACATAGTGACAGGATGGCGCCAAACCCAGCCTTCAGGACTCTGTCCTCCAGCAGAGTAACGTTATTGTCCTCATTAACAATGCATTTATACCACATTACCTT

Publications

PMID - Link Title
No publications available for this retrocopy