Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HMGN2P54
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr17:67949942-67950189  UCSC
Strand +
Parental Sequence XM_031665912.1
Parental seq. overlap 189 bp
Parental seq. overlap (%) 9.9%
Genomic Region Intragenic (PRPSAP1)
Retrocopy Summary HMGN2P54, located on chr17:67949942-67950189, is a retrocopy of the parental gene HMGN2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HMGN2
Full Name N/A
Also known as -
Coordinate chr1:24775416-24779599
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HMGN2P66
Chimpanzee Pan troglodytes HMGN2P49
Bonobo Pan paniscus HMGN2P47
Gorilla Gorilla gorilla HMGN2P17
Orangutan Pongo abelii HMGN2P49
Gibbon Nomascus leucogenys HMGN2P18
Green monkey Chlorocebus sabaeus HMGN2P35
Crab-eating macaque Macaca fascicularis HMGN2P46
Rhesus Macaca mulatta HMGN2P55
Golden snub-nosed monkey Rhinopithecus roxellana HMGN2P61
Marmoset Callithrix jacchus HMGN2P62
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HMGN2P54
tgccaccatgcccaagagAAGACGAACCACAGAGAAGATCCGTGAGGCTGTCTGCTAAACCTGCTCCTCCAAAGACAGAGCCCAGGCCTAAAGAGGCCGCtgcaaagaagggagagaaggtacccaaagggaaaaagggaaaagctgaCGCTGGCAAGGAGGGGAATGACTCTACACAAAGTGGAGACGCCTGAACAGACCAGGCAC
>XM_031665912.1
ACAGCTCCTACCTGCCCCACGGCACCCAAAAGGCACCTCTGCATGGAAAGTCTCCCCCTGAAACCCCTAGCCCACCTCGAGTGGGACCGTCTTTCAGGTGAGGTGCACGAAAGGCTTTCCCGAAGTGGCAGCTCGGAAGGATGCACGTCCGGCTGCGCCAAGCTGGCTTCCCCGCCTTTTTCCCACTTCGGCGTCAGCCTGGGCCCTGGGAACTGCAGCCTGTGCCTCCAGCCGCGCGCTTCCTTCTGCCTCCAGTGGAGCAGGGCAGTGCAGCCAGGCCTCGCAAACCCCTCTTCTGGGGCCCCCAGCGGGAGCAGGAAGGAAAGCCGCTGAGATGCGCCCTGAGTGTCGCATGGCTTGGAGAAGTGGGTTGCTGGGTTGCATAAGGTGGAAGGAACTTGCTAGTTTGCAAAAGACAGCTCTTGGCGGGAGCCGGAACCCCGAGCCTGCCGACTCGCGCACCCCTCCTCATTTACTGCCTTCGACGCGCGCCTCCCCGACTGCGCCCCCACCCCCTCGGCGCGCCGCCGTCTCGCGCGCACTTACCCCCCCACACCCCCCTCCTCACTCCCTCCAGAGGAGGTGAGTTTAAACCCCGCCCACGTGACCCCAGCTGGGCCAATGAACGGCGGCGGGAGGTGAAATCCGGTTCTAACCGGTCCGGGGCTCCCAGCGCTATAAAAACTTTATAAACCCCCCGGAGCCCGAGCAGTGTGAAGAAGAAGAGGCGAGAACGACCCCCGGACCGACCAAAGCCCGCGCGCGCTGCATCCCGTGTCCAGCACCTACGTCCCGCCGCcgtcgccaccatgcccaagagAAAGGCTGAAGGGGATGCTAAAGGAGATAAAGCCAAGGTGAAGGACGAACCACAGAGAAGATCCGCGAGGTTGTCTGCTaaacctgctCCTCCAAAGCCAGAGCCCAAGCCTAAAAAGGCCCCTGCAAAAaagggagagaaggtacccaaagggaaaaagggaaaagctgaTGCTGGCAAGGAGGGGAATAACCCTGCAGAAAACGGAGATGCCAAAACAGACCAGgCACAGAAAGCTGAAGGTGCTGGAGATGCCAAGTGAAGTGTGTGCATTTTTGATAACTGTGTACTTCTGGTGACTGTACagtttgaaatactattttttatcaagttttataaaaatgcagaattttgttttacttttttttttttttttaaagctatgttgTTAGCACACAGAacacttcattgttgtttttgggGGAAGGGGCATATGTCACTAATAGAATGTCTCCAAAGCTGGATTGATGTGGGGAAAACACCTTTCTCTTCTAGTTTTGAGAGACTTCCTCTTGGTTCCCAGGAGGAGGGAGTCCCTGACTTTGACACACATGGCCACCTTGGCACAAAAGCCTTGTGgtatggaaaaacaaatttgtttttatgttctcttctccctttccatctTTCAGCATAGACTTAACTCCCTTAAGCCCAGACATCTGTTGGGACCTGACCCGTAGTCATTGGTTACCAGTGTGTCAGGCAATCTGGACTTTCCAGTGATGCCACTGAGATGGCACCTGTCAAAACAGCATTGGTTCCATTTCTAGATTGTGGATCTTCAGATAAATTCTACCgttttcatttcacttcctgAAAGTCAGGGTCGGCTTGTGAAAAGTTGTTAAACAACATGCTAAATGTGAAATGTCAACCCTCACTCTAAACTTTCCCTGTTCAGAGCATCAGATGAAGACTTCATTGGGTTTTATAGTGGCTTTCTGATTTTTGGTAGTCCATTGAAGAAGGGAGTTTGAAAGTTGTTGTATACTGTTAACGATTGTCTGCCCATGTCCTGCCTGAAATACCATGATTGTTTATGGAAAGTATCTTTAATAAAGCTGGATACAGTTTGGCTTGGAA

Publications

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