Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name LOC101000688P4
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in NW_022162480). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr7:76456002-76456636  UCSC
Strand -
Parental Sequence XM_017949834.3
Parental seq. overlap 498 bp
Parental seq. overlap (%) 56.2%
Genomic Region Intergenic
Retrocopy Summary LOC101000688P4, located on chr7:76456002-76456636, is a retrocopy of the parental gene LOC101000688. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101000688
Full Name N/A
Also known as RPS6
Coordinate NW_022162480:84199-88222
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS6P36
Chimpanzee Pan troglodytes RPS6P20
Bonobo Pan paniscus RPS6P20
Gorilla Gorilla gorilla LOC101131142P18
Orangutan Pongo abelii RPS6P19
Gibbon Nomascus leucogenys RPS6P19
Green monkey Chlorocebus sabaeus RPS6P18
Crab-eating macaque Macaca fascicularis RPS6P5
Rhesus Macaca mulatta LOC712274P4
Golden snub-nosed monkey Rhinopithecus roxellana RPS6P5
Mouse lemur Microcebus murinus RPS6P6
Sloth Choloepus didactylus RPS6P19
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101000688P4
CACTAGCTGCTAGAAACGCACTGAAATGGACAATGAACACAAATATCATACCTTTTATGAGAAGCATATGGCCATAGAAGTTGCTGCTAATGCTGACTGAAGAGTGAAAAGCTTATGTCATCTGAATCAGTGATGGGAACTGCAAACAAAGTTTTCCCATGAAGCAGAATGTCTTGCCCCATGGCTGTGTTTGCTGCTACTAAGTAAGGAGTGTTCCTATCACATGCCAAGGAGAACTGGAGAAAGTACAAATCTGTTCAAGGTTGCATTGTAGATGTCAATTTGAGTGCTCTTAATTTggttactgtaagtcgggggAGAGAAGGATATTTTTGGACCGACTGATAATACTATGCCTCATCACCTAGGGCCCAAAAGTGCTAGCAGAATCTGCTAAGTTTTCAAATATCTCTAAAAAGATGATACCTACCATATACTGTGAGAAAGTCCCTAAACAAAGAAGTTAAGGAACTCAGGACCAGACTGCCCAAGATTCAGCATCCTGTTATTCCATGAGTCCTGCACACAAAACATCCACATATTGCTCTGAAGACACAGCTCgctaagaaaaataagtaagaggCTGCAGAATATGCTAAACTTTTGACCAAGAGAAC
>XM_017949834.3
CGCGAGAACTGAAAGCGCCTATGAGACTTGCGCTAAGCGGAAGTTGGTCCTCTTTTCCGTGGCGCCTCGGAGGCGTTCAGCTGCTTCAAGATGAAGCTGAACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGATGAACGCAAACTTCGTACTTTTTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACGCTCTGGGTGAAGAATGGAAGGGTTATGTGGTCCGAATCAGTGGTGGGAACGACAAACAAGGTTTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGTGTCCGCCTGCTACTGAGTAAGGGGCATTCCTGTTACAGACCAAGGAGAacgggagaaagaaagagaaaatcagttCGTGGTTGCATTGTGGATGCCAATCTGAGCGTTCTCAACTTGGTTATTGTAAAAAAAGGAGAGAAGGATATTCCTGGACTGACTGATACTACAGTGCCTCGCCGCCTGGGCCCCAAAAGAGCTAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGACGTCCGCCAGTATGTTGTAAGAAAGCCCTTAAACAAAGAAGGTAAGAAACCTAGGACCAAAGCACCCAAGATTCAGCGTCTTGTTACTCCACGTGTCCTGCAGCACAAACGGCGGCGTATTGCTCTGAAGAAGCAGCGTActaagaaaaacaaggaagaggCTGCAGAATATGCTAAACTTTTGGCCAAAAGAATGAAGgagGCTAAGGAGAAGCGCCAGGAACAAATTGCAAAGAGACGCAGACTTTCCTCTCTGCGAGCTTCTACTTCTAAGTCTGAATCCAGTCAGAAATAAGATTTTTTGagtaacaaataaataagatcagacTCGGA

Publications

PMID - Link Title