Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101002560P1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr2:12412753-12415206  UCSC
Strand +
Parental Sequence XM_009204235.4
Parental seq. overlap 2257 bp
Parental seq. overlap (%) 47.9%
Genomic Region Intergenic
Retrocopy Summary LOC101002560P1, located on chr2:12412753-12415206, is a retrocopy of the parental gene LOC101002560. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101002560
Full Name N/A
Also known as ABCF2
Coordinate chr4:8017253-8033668
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ABCF2P1
Chimpanzee Pan troglodytes ABCF2P1
Bonobo Pan paniscus ABCF2P1
Gorilla Gorilla gorilla LOC101153143P1
Gibbon Nomascus leucogenys LOC100596437P1
Green monkey Chlorocebus sabaeus ABCF2P1
Crab-eating macaque Macaca fascicularis ABCF2P1
Rhesus Macaca mulatta ABCF2P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104675406P1
Orangutan Pongo abelii Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101002560P1
CAGAGGCCAAGCGGCGAGGCCCAGCTCCTTGTAAGAACAGTAACCTACCCCTGTGGGTCATCCTCATGCCCTCCGACCTGGCCAAGAAGAAGGCAGCCGAAAAGAAGGAGGCTGCCAAAGCTCGACAGCGGCCCAGAAAAGGACATGAAGAAAATGGAGATGCTGTCCCAGAACCACAGGTGGCAGAAATAAGGCCAATGGCAGAGACACCACAGAAGTGGATTTGCTGACCAAGGAGCTAGAGGACTTTGAAATGAAGAAAGCTGCTGCTCTAGCTGTCACTGGCATCCTGGCCTCTCATCCCAGCAGTACTGACGTTCACATTATCAACCTCTCACTCACCTTTCACAGTCAAAAGCTGCCCAGTGACACCAAGCTGGAATTGAATTCAGGCCGTTGTTATGGCCTCATTGGCTTAAATGGAATTGGAAAGTTCATGCTGTTCTCTGCTATTGGGAGACGTGAAGTGCCCATCCCTGAGCACATCGACATCTACCATCTGACTTGAGAGATGCTCCCTAATGACAAGACACCCTTGCAGTGTGTGATGGAAGTTGACACAGAGTGGGCCATgctggagagagaggcagagcatCTGGTTCTTGAAGATGCGGAGTGTGAGAAGCTCATGGAACTCTACGGGTACCTGGAGAAGCTGGATGCTGATAAGGCAGAGATGAGGGCCTCGCAAATCTTGCACAGACTGGATTTCGCACCTGCCATGCAGCGCAGAAAGCTGAAAGACTTCAGTGGGGGCTGGAGGATGAAGGCTGCCCTTGCCAGAACCCTCTTTATTTGGCCCTTCATGCTGCTCCTGGATGAACCCATCAACCATCTGGACCTAGATGCTTAAATGTGGTTAGAAGAAGAACTAAAAACTTCTAAGAATATCTTGGTCCTTGTCTCCCATTCCCAGGATTTTCTGAATGGTGTCTGTACCAACATCATTCACACGCACAAGAAACTGAAGTATTATATGGGTAATTATGATCAGTATGTGAAGATGCAGCTAGAACTGGAGAAGAACCAGATGAAGAGGTTTCACTGGGAGCAAGATCAGATTGCGCACACGAAGAACTACAttgcgaggtttcaccatggcaGTGGCAAGCTGGCCTGGCAGGCCCAGAGCAAGAAGAAGATGCTACAGAAAATGATGGCATCAGGACTGACAGAGAGGATCATGAGCGCCAAGACACTGTCATTTTATTTCCCACCATATGGCAAGATCCCTCCACCCGTCATTATGGTGCAAAATGTGAGCTTCAAGTATAAAAAAGATGGGCCTTGCATCTACAATAATCTAGAATTTGGAATTGACCTTGACACATGAGTGGCTCTGGTAGGGCCCAACAGAGCACGGAAATCAACTCTTCTGAAGCTGCTAACTGGAGAGCTACTACCCACAGATGGCATGATCTGAAAGCACTCTTGTGTTTTCAGCATTTACAAGAGCAGCTGGACTTAGATATCTTGCCTTTGGAGTACATGAAGTGCTACCCAGAAatcaggaagaaatgaagaagatcATTGGGTCATATGGTCTCACTGGGAACCAACAGGTGAGCCTAATCTGGAACTGGTCAGATGAGCAGAAGTGCCAAGTGTGTCTGGTCTGGCTGGCCTGGCCGAACCACCACATGCTCTTCCTGGACAAGTCCACCAATCACCTGGATATTGAGACCATCGACACCCTGGCAGATCTATCAATGAGTTTGAGGGTGGTATGCTGCTGGTCAGCCATGGCTTCAGACCCATTCAGCAGTTTGCACAGGAAATTTGGGTGTGTGAGAGGCAGACAATCACCAAGTGGCCTGGAGACATCCTGGCTTACCAGGAGCACCTCAATCCAAGCTGGTGGATGAGGAGCCCCAGCTCACCAAGAGGACCCACAACATGTGAGGCCTCTACCTGGGCTTGGGTCAGGATCTCCATCTGGGAACTAACATCTGCTACCCTGACCAGCTGCTCAGGACAGGACCCTGGGGCTACACTCCTGCATTGCTGCAATTTCGCTTCCCCagcctctcccctgcccctcaaCCTCCCTTAACTGCACTCTCTTATCTACAGCTGGACAGTACTTGTCCACTTTTTGTCCTCCTTTCAGTTACATCTGTCCATGTCTGGAATTGGTTAGCCATTCGCTCCAGCCTCTTGCTGGTTACCTTACTCTGAACGTGATGCAGTCAGAGGTACCCGTGGATTAGCCCAAGGGCCCAAGCCCCGGATTTGACTTGTGGAGTAGCTTAGGATCCTCATTTTCTGGGTTTTGGTGATGTTGGAGGAGTACCCCCCAATCCACTACCcccattcctttttccttctggttTGGAGCTCTGGACTAGGACCTTCGTCCTGGTcagtttttaaatagttatttaacAGCGTAACTTTTAGACCTGCATGACATCTACAAAGTGCccaataaagaaagagaaaaccacggtccc
>XM_009204235.4
GGCGTCACGCGGCCCCGCGAGGTGTCTGGGATACGCGGTAGTCCTGAAGCCGGGTCTCACTCTTGGCCGCTGCAACTTGAGGACTACACTTCCCAGGAGGCAGCGCGGCGGCGCGCCGAGAACCACCCGAGGTCGTGATTGGCTGGTGAGCCGGCCGCACGCGGAGGAGCCCAAGGAGCAGCTCTGTTGCGACAGAGGCCGAGCAGCAAGGCCCAGCACCTTGAAAGAACAGTTAACCTACCCCTGTGGGTCATCATCATGCCCTCCGACCTGGCCAAGAAGAAGGCAGCCAAAAAGAAGGAGGCTGCCAAAGCTCGACAGCGGCCCAGAAAAGGACATGAAGAAAATGGAGATGCTGTCACAGAACCACAGGTGGCAGAGGAGAAGAATGAGGCCAATGGCAGAGAGACCACAGAAATAGATTTGCTGACCAAGGAGCTAGAGGACTTTGAGATGAAGAAAGCTGCTGCTCGAGCTGTCACTGGCGTCCTGGCCTCTCACCCCAACAGTACAGATGTTCACATTATCAACCTCTCACTCACCTTTCATGGTCAAGAGCTGCTCAGTGACACCAAACTGGAATTAAACTCAGGCCGTCGTTATGGCCTCATTGGTTTAAATGGAATTGGAAAGTCCATGCTGCTCTCCGCTATTGGGAAACGTGAAGTGCCCATCCCTGAGCACATTGACATCTACCATCTGACTCGAGAGATGCCTCCTAGTGACAAGACACCCTTGCAGTGTGTGATGGAAGTTGACACAGAGCGGGCCATgctggagagggaggcagagcgGCTGGCTCATGAGGATGCGGAGTGTGAGAAACTCATGGAGCTCTACGAGCGCCTGGAGGAGCTGGATGCTGACAAGGCAGAGATGAGGGCCTCGCGGATCTTACATGGACTGGGTTTCACGCCTGCCATGCAGCGCAAGAAGCTAAAAGACTTCAGTGGGGGCTGGAGGATGAGGGTTGCCCTTGCCAGAGCCCTCTTTATTCGGCCCTTCATGCTGCTCCTGGATGAGCCCACCAACCACCTGGACCTAGATGCTTGTGTGTGGTTGGAAGAAGAACTAAAAACTTTTAAGCGCATCTTGGTCCTCGTCTCCCATTCCCAGGATTTTCTGAATGGTGTCTGTACCAACATCATTCACATGCACAACAAGAAACTGAAGTATTATACGGGTAATTATGATCAGTATGTGAAGACGCGGCTAGAGCTGGAGGAGAACCAGATGAAGAGGTTTCACTGGGAGCAAGATCAGATTGCACACATGAAGAACTACATTGCGAGGTTTGGTCATGGCAGTGCCAAGCTGGCCCGGCAGGCCCAGAGCAAGGAGAAGACGCTACAGAAAATGATGGCATCAGGACTGACAGAGAGGGTCGTGAGCGATAAGACACTGTCATTTTATTTCCCACCATGTGGCAAGATCCCTCCACCTGTCATTATGGTGCAAAATGTGAGCTTCAAGTATACAAAAGATGGGCCTTGCATCTACAATAATCTAGAATTTGGAATTGACCTTGACACACGAGTGGCTCTGGTAGGGCCCAATGGAGCAGGGAAGTCAACTCTTCTGAAGCTGCTAACTGGAGAGTTACTACCCACAGATGGCATGATCCGAAAACACTCTCATGTCAAGATAGGGCGTTACCATCAGCATTTACAAGAGCAGCTGGACTTAGATCTCTCGCCTTTGGAGTACATGATGAAGTGCTACCCAGAGatcaaggagaaggaagaaatgaggaaGATCATTGGGCGATACGGTCTTACTGGGAAACAACAGGTGAGCCCAATCCGGAACTTGTCAGATGGGCAGAAGTGCCGAGTGTGTCTGGCCTGGCTGgcctggcagaacccccacatgCTCTTCCTGGACGAACCCACCAATCACCTGGATATCGAGACCATCGACGCCCTGGCAGATGCCATCAATGAATTTGAGGGTGGTATGATGCTGGTCAGCCATGACTTCAGACTCATTCAGCAGGTTGCACAGGAAATTTGGGTCTGTGAGAAGCAGACAATCACCAAGTGGCCTGGAGACATCCTGGCTTACAAGGAGCACCTCAAGTCCAAGCTGGTGGATGAGGAGCCCCAGCTCACCAAGAGGACCCACAACGTGTGAGCCCTCTACCTGGGCTCGGGTCAGGAGCTCCATCTGGGAACTAACAGCTGCTACCCTGACCAGCCGCTCAGGACAGGACCCTGGGGCTACACTCCTGCATTGCTGCAATACTGctcccccagcctctcccctgcccctcaaCCTGCCTTAGCTGCACTCTCTTATCTACAGCTGGACAGTACCTGTCTGTTTCCTGTCCTCCTTCCAGTTACGTCTGTCCATGTCTGGACTCGGCTGGCCGTTCCCTCCAGCCCCTTGCTGGTTACTTACTCTGAGTGTGATGCAGTCAGAGGCACCAGCGGGTTAGCCCAAGGGCCCAAGCCCTGGATTTGGCCCGCGGAGGAGCTTAGGATCCTCGTTTTCTGGGTTTTGGTGATGTTGGAGGAGTACCCCCAGCCCACCGCCCCGATTCCTTTTTGCTTCTGGTTTGGAGCTCTGGACCAGGACCTTCGTCCTGgtcagtttttaaataattatttaacagtGTAACTTTTAGACCTGCGTGACATCTACAAAGCGCCCAATAAAGAAAGAGGAAGCCACGGTCCCTACCTTCCTTCTCGGGTCTCTGGGGCCTTCTCCTCCCTGCAGTGCCAACATGCACTGCCCTCAGCAGGAGCTGGATCCAGCGTCAGTGTGTGGATGGGAACCGAAGACTAGTCCGTAGGAGCTCGAAGAACGTTCTCCCTTTACTGCGGATTTGAAATTGCACCTTTTCTCAGGCCTGTGATTCACAGACTTGAACGtgaatcagaatcacctggagcaCTCATGAGATCAGATTGCCAGATCTCGCCTCGGTTTCTGGTTCAGTAGGTTTTGGGGGAGACCAAGAACGTgaacatttctaacaagtttccaggtgatgctgttgTTGCTGGTCCAGGGGCTGTATTTGGAGAACCACTGTCCAGGAGCGTGGTTTTCCGATTGTGATCTGAGGTTCTGCCCCAACTGCATAGAAGTTGGGCTGCTTGTTAAAAacgcaggccaggtgcggtggctcacacctgtaattccagcgcttcgggaggctgaggcaggtggatcacttgagctcaggagttcaggaccagtctgggaAATATGACGAAACCCATCTTTACACGCCTGGAATCCCACCTGCTCAAGTGGCTggggtggatggattgcttgagcccgggaggcggaggttgcagtgagctgagattgcaccactgcattccagcctgggtgacacagcaacaccctgtctcaaaaaaatgcagactggccaggcacagtggctcacacctgtattccgaCTGTAAGCTTATcaccttgggaggccaatgtaggaggatcagttgagcccagaagttcaagaccagcctgggcaaagtagggagaccccatctctacaaataataataaaacgaACCGGGCATGGTaccatgtgcctgtggtcccagctgctctggaaagaggaggctcacttgagcccaggaggttgaggctgcagtgagcagagaacgtgccactacactccagcctgaggacagaccgagacactgtctcaaaaaataaaggttGCTGAGCATCAGACCTATTGATTAATCACGTTTGGTAGAATGAGAGAAGTGCAGAGATGGCCAGGAGTTTGCATTTTCACACCAACATCTGTGAACCTTTCTTCCTATTGGGATACAGGaaagtttgtatttttacctGTCCACAGCCATAGTTTTCATCATCACTATTGAATTCACTTCCAGCCCAGGGCTCTGCATACCTTATCTGGGTCTTTTGAACTTCAGTAGCCCCTCACCAGTGGCCATCCTTCCTGGTATGGATTCATCACTCTGCCTCTGAAATCAGTAGCCATCCCTATGGGAAGACACAGCCATGGTTTTTCAGTACTCATTATGCCAGGACTGGCGGGAGCAACTGTCCCAGATGGTGTTTAAACCCCTTAGGAGCTCATGATCTTGTTGGAAAGCCAGTAAGACAGAACCATACAGGACACAAATTAGATGCTAAATTGTGATTTAGATAGGAGACAGAAGTATTCAAAAAGGAGGGAAATTTCTTGTGAGTAGCTGCCCAGAGAGGTGGAATTAGTGTGCTCTCACTTGGAAAATGAGGAGGGTCTTCTCAGATGGCCACGAAGTCCAGGAACTGCCCTGGGCAACAGGGACAAGAGCCTCCCATGAGACACTGCAGCAGAGACAGACGGGAGTCCTCTACCCACTGACCCCAGAGAGTGCTGGCCTGACTGCTTTATGCCTTAAGTGGGACCTGGAGCAAAATGGCCCAAGTGAGTCTGTCCTGAGTGTCCAGAGCCTTGGTGCAGGGGAGAATGGCATCTGGAGAGTGGGCTGCTGGGATAATGGGAACAGGGAGGGACAGAGTCCCTGCTACTTCAGCCAAGGAAGTGCTGGATATTGCTAAGAATCTAGGTAGTCTCGGGATCTCTGGTCTCCATGCTAGGACAGGAGGTCTTCGGAACCTAGAGGAATGGAAATAGTCTAGTCAGCTTACTTGTCGAGAAAAATGTCAACCTTGGTAATTTAAAGAATGCTTTAAAAGTccacaaaatacatatttctaaaatta

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