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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101006882P26
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr10:85693817-85694148  UCSC
Strand +
Parental Sequence XM_003919465.4
Parental seq. overlap 320 bp
Parental seq. overlap (%) 54.4%
Genomic Region Intragenic (CDK15)
Retrocopy Summary LOC101006882P26, located on chr10:85693817-85694148, is a retrocopy of the parental gene LOC101006882. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101006882
Full Name N/A
Also known as RPL36A
Coordinate chrX:51442939-51448352
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus RPL36AP12
Crab-eating macaque Macaca fascicularis LOC102125097P29
Rhesus Macaca mulatta LOC703365P28
Golden snub-nosed monkey Rhinopithecus roxellana LOC104659583P31
Sloth Choloepus didactylus FXNP7
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101006882P26
CCTTTCTGTAAGAAGTGTGGCAAGCACAAAGTGACACAGTACAAGAAGGGCAAGGATTCTCTGTATGCCCAGGGAAAGTGGCGGTATGACAGGAAGCAGAGTGGCTATGGTGGGCAAAGTAAGCCGATTTTCCGGAAAAAggctaaaactacaaagaagattGTGCTAAGGCTTGAGTGTGTTGAACCCAACTGCAGATCTAAGAGAATGCTGGCTATTAAAAGATGCAAGCATTTTGAACTGGGCGGAGATAAGAAGAGAGAGGGCCAAATGATCCAGTTCCAAGTGTCATATTTTATTGTGAAGACAATAAAATCTTGAGTTtatgttca
>XM_003919465.4
GGTGAGTGGACCACCCTTTAGGCGGAGTCCTTCCTTAAGCTCCCGCCCGCGGCTCGGAACTGAGTCCTCTCAGCAGCCGGAGGGCGCTGCGCCGAGCCTTACACTCTATGATTGCTCCTACCGACTCCCATGAGGAAGTGCGATCGGGAACCTCCTATATACTTCCGTTTGCGGCgcggcttctttctttcttcccgtGCCGGTATCGCTCTCGCAATCATGGTTAACGTCCCTAAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCACCAACCCCACAAAGTGACACAGTACAAGAAGGGCAAGGATTCTCTGTATGCCCAGGGAAAGCGGCGTTATGACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCCGATTTTCCGGAAAAAGgctaaaactacaaagaagattGTGCTAAGGCTTGAGTGCGTTGAGCCCAACTGCAGATCTAAGAGAATGCTGGCTATTAAAAGATGCAAGCATTTTGAACTGGGAGGAGATAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAAGTGTCATCTTTTattatgaagacaataaaatcttGAGTTTATGTTCAG

Publications

PMID - Link Title