Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101012615P24
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in NW_022168322). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr20:39822575-39823846  UCSC
Strand -
Parental Sequence XM_003900965.3
Parental seq. overlap 1156 bp
Parental seq. overlap (%) 70.3%
Genomic Region Intragenic (ZNF788P)
Retrocopy Summary LOC101012615P24, located on chr20:39822575-39823846, is a retrocopy of the parental gene LOC101012615. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101012615
Full Name N/A
Also known as RSL24D1
Coordinate NW_022168322:34194-50403
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes RSL24D1P17
Bonobo Pan paniscus RSL24D1P18
Gorilla Gorilla gorilla RSL24D1P17
Orangutan Pongo abelii RSL24D1P17
Gibbon Nomascus leucogenys RSL24D1P10
Green monkey Chlorocebus sabaeus RSL24D1P5
Crab-eating macaque Macaca fascicularis RSL24D1P21
Rhesus Macaca mulatta RSL24D1P21
Golden snub-nosed monkey Rhinopithecus roxellana RSL24D1P10
Human Homo sapiens Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101012615P24
GGTGGGGACCCATGCGGGTTCAACATGCGTATCAAGAAGTGTTATTTCTGTTTGGGGCCCATCTACCCTGGCCATGGCATGATGTTCTTCTGCAACAATTGCAAGGTGTTCAGGTTTTGTAAATCTACATgtcataaaaactttaaaaagaagtgcAATCCTCACAAGGTTAGGTGGACGAAAGCATTCTGGAAAGCAACCAGTAAAGAGCTTACAGTGGAAAATTCATTTGAATTTGAGAAACATAGAAATGAACCTATCAAATACCAGCAAGAGCTATGGAATAAAACTGTTGATGCAATGAAGAGAGTTGAAGAGATCAAACAGAAATGGCAAGCTGAATTTATAATAAACtgattgaagaaaaatgaagagctaCAGAAAGCTCAGGATATCAAAGAAGTCAAGCAAAACATCCATCTTATCCTAGCTCCTTTTGCAGGCAAAGGGAAGCAGTTGGAAGAGAAAATGGTACAGCATTTACAACAGGATGTGGACATGGAATATGCGTCTTAAAAATCTCTGTAACCATTTCTTTATGTAAATTTGAAAAAGCCCCTTGGAGAATTAGAACTGCTAaattcttagtttattttttatataaggtcacttaaatgaaaagtgattaaaatatatttttcctacaTTGCTATCTACAAAACATCAGATATTACGGATATTAGATTGCATCTCAGTGTTAAATATTCACGGATAGATGTACTTATGTAAAATCATGAAAATTCTACTTATAACTATAGAAGTGAATTGTGGACATAACATGGTTATACCATTTGGATAATGGCACTTGGCAGCATTTATATAATAACTAATGGCAAAAATTCATGGCTAgtgatgtataaaataaaatattatttggagtaaaatatttatttaaagttatagAAGGGAAATACAACAAGGACCTAACAATTTGTATGACAAtgtcaaatattattttgattttagtaTTTCCTGTTTGGGTTTATTTGCATCTTAGAAGAGCATAATGGCATTGTTTGATGAAGCCTCATGCTGCACTATTTTGACCTGGTTTAATCGTTCTGATAGGTAGTTGTGGATATTGGGGATGAGAACTGAATAATCTTTGCCTGGAATGGCACTGCACTCTAGAATTTCCACTTTGGAGAATACTCAGTTCTAACTTGTGATTCCTGGTagaacaaactttatttttctagactAGCAATGATCTAGAAGCAGAGGAATCTCATtgccttttaaaatctattatgtggttttcttttaaaaagt
>XM_003900965.3
CCGCACGGCCGCGGGAGGCACAGTCGTGTTCGCTTCTCGTCTAACTGACCCGCGAGAACTAAGGACGCTTGCCTTTTTCCGGTcgggggaagggggaagaaggTCACTTCCGGTGACGGGGCTGCGTCACTTCCTCTCAAGCTTGGCGTTTGTTTGGTGGGGTCCCACGCGGGTTCAACATGCGTATCGAGAAGTGTTATTTCTGTTCGGGGCCCATCTACCCTGGACACGGCATGATGTTCGTCCGCAACGATTGCAAGGTGTTCAGATTTTGCAAATCTAAATgtcataaaaactttaaaaagaagcgCAATCCTCGCAAAGTTAGGTGGACCAAGGCATTCCGGAAAGCAGCTGGTAAAGAGCTTACAGTGGATAAttcatttgaatttgaaaaacgTAGAAATGAACCTATCAAATACCAGCGAGAGCTATGGAATAAAACTATTGATGCAATGAAGAGAGTTGAAGAGATCAAACAGAAACGCCAAGctaaatttataatgaacagattgaagaaaaataaagagctaCAGAAAGTTCAGGATATCAAAGAAGTCAAGCAAAACATCCATCTTATCCGAGCCCCTCTTGCAGgCAAAGGGAAGCAGTTGGAAGAGAAAATGGTACAGCAGTTACAAGAGGATGTGGACATGGAAGATGCTCCTTAAAAATCTCTGTAACCATTTCTTTTGTGTACATTTGAAAAGACCCTTTGGATACTTGGAACTgctaaattatcttattttttacataagGTCACTTAAATGAAAGGTGATTAAAATACATCTTTCCTACATTGCCTTCTACATAACATCAGATATTATGGATGTTAGATTGCATCTCAGTGTTAAATCTTCACTGATAGATTTACTTAAGTAAATCATGAAAATTCTGCTTATAACTATAGAAGTGAATTGTGGATGTAAAATGGTTATGCCATTTGGGTAATGGCACTAGGCAGCATTTGTATAGTAACTAATGGCAAAAATTCATGGCTAgtgatgtataaaataaaatattctttgcgGTAAAATATTCCCTTTGTTAATGTTATAGAAGAGGGGGATACAAAAAGGAACTAACAATTTGTATGGCAGTATcagatattatttttgttttagtatttcCTGTTTTGGTTTATTTGCATCTTAGAAGAGCATAATGACATTGTTTGATGAAACCTAAATTATGCTGGACTGTTTTGACCTGGTTTAACCCTTCTGATAGGTAGTTGTGGATGTTGGGGATGAGAACTGAATAATCTTTGCCTGGAGTGACACTACACTCTAGAATTTCCACTTTGGAGAATATTCAGTTCTCACTTGTGATTCCTGGTagaacaaactttatttttctagccCAGCAGTGATCTAGAAGCAGAGGAATCCCAGcgccttttaaaagttattatgtggttttcttttaaaaagctgctgATTTTGGAAGGTAGAATTTATGGGTACAACGTATGTTCATtatttgtatgtaaaataaaaccatttaaaaagtaatgcgatatttattatttaaaggcACTAAACAAAGATGAAGTATTGATTATCTGGAAGAAGAAATCTTCCTCCACACATCCCATTTAAGTAGGAGATACATTTAATTAAAGAGAAATAGATACTTAA

Publications

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