Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101014153P1
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr8:121989315-121989934  UCSC
Strand -
Parental Sequence XM_021930289.2
Parental seq. overlap 338 bp
Parental seq. overlap (%) 24.9%
Genomic Region Intergenic
Retrocopy Summary LOC101014153P1, located on chr8:121989315-121989934, is a retrocopy of the parental gene LOC101014153. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101014153
Full Name N/A
Also known as ZNF708
Coordinate chr20:30746048-31448665
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZNF738P1
Chimpanzee Pan troglodytes LOC107969849P1
Bonobo Pan paniscus ZNF738P1
Gorilla Gorilla gorilla ZNF738P1
Orangutan Pongo abelii ZNF107P1
Gibbon Nomascus leucogenys LOC100580486P2
Green monkey Chlorocebus sabaeus ZNF85P1
Crab-eating macaque Macaca fascicularis LOC102123757P1
Rhesus Macaca mulatta LOC100423287P1
Golden snub-nosed monkey Rhinopithecus roxellana ZNF680P1
Marmoset Callithrix jacchus LOC103788059P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101014153P1
AGAATTGTCTCTGGAGGAGTGGCAATGCCTGGACACTGCGCAGCggaatttatatggaaatgtgaTGTTAGTGGACTACAGAAACCCAATCTTCCTGTGTATTGCTGTCTCTAAGCCATACCTGATCACCTGTctggagccaaaaaaaaaaaaaaaagagccttggAATATGAAGGGACATGAGATGGTAGCCAAAGCCCCACTGGATGGGAGCAAAAGTGAATACAACAGACGACACAGATGAGAAGTCCAAAGGTCAAGGAGAAAGTCAGTCCTTAAAATGTGATTTGGGAAGCTGTGTTCTAACGAAAATAATGTCTGGGAAGCCTGAGTTTTTTTATATTGCTTTCTCATAGGGCATCTTCTGTCTTATGCTTTTAAATTCTCTAAGAATTCTACTTCCCTTTGGTGATCTTCTTTCAAGTTTACAGTGAGAGCCAAAAGTCTTCTCCATGGCATATTAGAGACTGCACAATCTAACTGCTTTTCCGTTGTTTTGGGGAACACACAAATATCTGCATACTTTTGAGAAACTCTAGGTTGAACTAttttttacattctctttttgcATCATGTCTGAAATGTGTGAGTAGtgatttctgttccattggt
>XM_021930289.2
cgccattgtactccagccagggcaacaagagcgaaactcggtctcaaaaaaaaaaaattttttttagaacaaTTGTTGTATTCTTTTCATTTGTGATAGCCATATAGTATATTATTTATAAGAGCATATGACCTTACACACAAGATTAAAGGCAAACAACCTCTGGGGTGGGCCTAGCTCAGCTCACGGAGGAAGCCTTGCCTGAAAATGCTGCAGCCTAGGCGGTCACACTTCATTCAGCCCAGCATCTGATCACATCTTCTGTCACTCAGGGTCTGAAGGGGCGGGTCTTAAACATTATCCAATCAGGGACTCTGAGCTAGGGGACAGTTCAATCAGACACGCAGCTGGACCGGACAGGGCGGCTTCCGGGTTTGGCGCGGCCTTTGTCTCTCGCTTCAGCCGGAGCTCCAGGTCTCGTCTTCGCTGCTCTTTGTCCTCTGCTCTTAGAGGCCCAGACTCTGTGGCTCTGTGACCGACAGGCATTGGGAGATCCACAGCTAAGACGCCAGGACCCCCTGGAAgcctagaaatgGGACTATTGACATTTATGGATGTGGCTGTAGAATTCTCTCTGGAGGAGTGGCAGTGCCTAGACACAGCACAGCAGAATTTATATAGGAATGTCATGTTAGAGAACTACAGAAACCTGGTATTCCTGGgtaTTGCTGTGTCTAATTTAGACCTGATCACCTGTCTGGAGCAAGGAAAAGAGCCCTGGAATATGAAGAGACACGAGATGGTAGCCAAACCCCCAGTGATCTTCCttcaagtttacagtgagctaAAGTCCTCTTCATGGCATATAAGAGATTGCacaatctgactttttttttccattgtttttggaGACTCAGAAATATCTGCATAATTTTGAGAAACTCTGTGTCACACTATTTTGTAAGTTCTCTTTTTGCATCGTGTCTGAAATGTGTAAGAGTTGTGgtttctgttccattttttttttgttgtttatttttccacaCATTTCATCCTGTTTGTATTACTACAGGCTTGAAATACAGTTTGAAATTAAGAAGTGTGatgttctgctttgtttttattcctcatgattgctttgactattcaaaGTTTCTCGtagttttggctgggtgcagtggctcacagctataatccta

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