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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101014662P29
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr17:22341241-22341576  UCSC
Strand -
Parental Sequence XM_009198824.1
Parental seq. overlap 310 bp
Parental seq. overlap (%) 55.9%
Genomic Region Intergenic
Retrocopy Summary LOC101014662P29, located on chr17:22341241-22341576, is a retrocopy of the parental gene LOC101014662. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101014662
Full Name N/A
Also known as RPL35A
Coordinate chr2:193542743-193548510
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL35AP35
Bonobo Pan paniscus RPL35AP32
Gorilla Gorilla gorilla RPL35AP10
Orangutan Pongo abelii RPL35AP32
Gibbon Nomascus leucogenys RPL35AP36
Rhesus Macaca mulatta RPL35AP30
Golden snub-nosed monkey Rhinopithecus roxellana RPL35AP43
Marmoset Callithrix jacchus RPL35AP18
Chimpanzee Pan troglodytes Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101014662P29
cttctaaaagaaaatatgtctgGAAGGCTGTGGTCCAAGGCCATTTTTGCTGGCTATAAGCAGAGTCTCCGGAACCAAAGAGAGCATACAGCTTTTCTTAAAATTGAAGGTGTTTATGCCCGAGATGAAATAGAATTCTATTTGGGCAAGAGATGTGCTTATGTATACAAAGCAAAGAACAACAAAGTGACTCCTGGcggcaaaccaaaccaaacaagaGTAATCTGGGGAAAGGTAAGTCAGGCCCACAGAAACAGTGGCATGGTTCATGCCAAATtctgaagcaatcttcctgctaAGGCTATTGGACACAGAATCCAAGTGATGCTGTACCCT
>XM_009198824.1
TTCTCTTCCCGCCATCTTGGCTCCTGTGGAGGTGAGTGAAGCGCCTGTTGCTGAAATTTGGGGGCAAATAACCGGAGTAGGTTTGTTCCTATACCGCGGTGAGTCGCCGgccTGCTGGGAACGGGACTTCTAAAGGGAACTATGTCTGGAAGGCTGTGGTCCAAGGCCATTTTTGCCGGCTATAAGCGGGGTCTCCGGAACCAAAGGGAGCACACAGCTCTTCTTAAAATTGAAGGTGTTTATGCCCGAGATGAAACAGAATTCTATTTGGGCAAGAGATGCGCTTATGTATACAAAGCAAAGAAcaaCACAGTGACTCCAGGCGGCAAACCAAATAAAACCAGAGTCATCTGGGGAAAGGTAACTCGGGCCCATGGAAACAGTGGCATGGTTCGTGCCAAATTCCGAAGCAATCTTCCTGCTAAGGCCATTGGACACAGAATCCGAGTGATGCTGTACCCCTCAAGGATTTAAACTAacgaaaaatcaataaataaacgtGGATTTGTGCTCTTGTATTTTTGTTAAGTGGATTAAAGAACTTACTACCTTAAA

Publications

PMID - Link Title