Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC103887337P57
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr20:26491098-26492068  UCSC
Strand -
Parental Sequence XM_031652478.1
Parental seq. overlap 581 bp
Parental seq. overlap (%) 36.9%
Genomic Region Intergenic
Retrocopy Summary LOC103887337P57, located on chr20:26491098-26492068, is a retrocopy of the parental gene LOC103887337. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC103887337
Full Name N/A
Also known as -
Coordinate chr11:110875913-110877775
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PPIAP58
Chimpanzee Pan troglodytes PPIAP80
Bonobo Pan paniscus PPIAP80
Gorilla Gorilla gorilla PPIAP82
Orangutan Pongo abelii PPIAP80
Gibbon Nomascus leucogenys PPIAP38
Green monkey Chlorocebus sabaeus PPIAP12
Crab-eating macaque Macaca fascicularis PPIAP84
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC103887337P57
GAGCCCTTGGGCCGCATCTCCATCCAGCTGTTTGTAGACAAGtttccaaagacagcagaaagTGTTCATGCTCTGAGCATtggagagaaaggatttggttataagggttcctgctttcacagaattattccagggtttaTGTGTCAGGGTGGTGACTTCACACACCATAATGGCACTGGTGGCAAGTCCATCTATGGGGAGAAATTTGGTGATGAGAACTTCATCCTGAAGCAGACAGGTCCTGGCATCTTGTCCAAGGCAAATGCTGGACCCAACACAAATGGttctcagtttttcatctgcactgccaAGAGTGACTGGTTGGATGGCGAGCATGTGGTCTTTGGCAAGgtgaaagaaggcatgaatatTGTGGAGACCATGGAGGGTTTGGGATCCAGGAATGGCAAGACAAGCAAGAAGATCACCACTGCTGACTGTGAATGACTCTAATAAGCTTgacttgtgtcgacTTATGTTTTATCTTAACCTTGAGaccattccttctgtagctcGGGAGAACACTCCTCCACCACCCCATTTGCTCACAGAGTCCTAGAATCTTTGTGCTCTCACTGCAGTTCCCTTTGAGCTCCAagatttccttcttcctttccatgcctagctggattgcagagtcaagtttatgattatgaaatagaaactaaataat
>XM_031652478.1
tgattgcatcactgcacttcagcctgggtgacagagtgagacctagtctcttaaaaaaaacaaaaacaaaaaaggctttgCAGATGCCACTGCTGCCCGGAGCCCTGTACTATCAGCCATGGTCAACCCTACCATGTTCTTCAACATGGTCGTCAACGGCGAGCCCTTGGGGCGTGTCTCCTTCAAGCTGTTTGCAGACAAGGTTCCAAAGACAGAAAACTTTCGTGCTGtgagcactggagagaaaggatttggttataagggttcctgctttcacagaattaATCTAGGGCTTATGTGTCAGGGTGGTGACTTCACATGCCATAATGGCAGTGGTGGCAAGTTCGTCTACAGGGGTAAATTTGATGATGAGAACTTCATCCTGAAGCACACAGGCCCTGGCATCTTGTCCATGGCAAATGCTCGACCCAACACAAACggttcccagtttttcatctgcactgccaAGACCGAGCGGTTGGATGGCAAGCATGTGGTCTCTGGCAAGGTGAAAGAAGGCATGAGGATTGTGGAGGCCATGGAGCGCTTTGGGTCCAGGAATGGCAAGAGCAGCAAGAAGATCGCCACTGCGGACTGTGGACAACTCGAATAAGTTTGACGTGTGTTTTACCTTCACCACCAGaccattccttctgtagctcCGGAGAGCACCCTCCACCCCATTTGCTCGCAGTATCCTAGAATCTTTGTGCTCTCACTGCAGTTCCCTTTGGATCCCATGTTTTCCTTGTTCACTTCCATGCCTAGCTGGATTGCAGAGTTAAGTTtatgacaatgaaataaaaactgaataacaaaaaataataataatctacctataaaattgtgaaaaaggaaaaataccttTGTGCCTAGGCTATGCAGGATAGGAGTGGGGACTAGCCGTGCTTTTAGGCATCGCCTGGGAGACTTGGAACGCCTTCTTGAGGATAAGGGGTGCCTACTGTATATTGTTTGTATTGATCTGTTGTCATTTGAAAGGTCATTTGAATGTCTTTCCGGGTCACCGCACAGCCTGCACCTGAGTCAGGTCAATTGGCTGGCCATCCCGTCACGTGATTCTATACAGGGtaccattatttattcatttccttattGCTGGAGCTTCATGGCCAAGGCTGCCAGTGGGCCCCTTCTTCCACAGTGACACTGCTTGCTCTGGGCACCTGGAGGGCCCCACTCATCCCTCCTGCTGGCTGGGATGTGCGTACTAGTGGTAGGAAGTTATTCCAGAGCACCTGCACCAAGCCAGCATCCTGGGGCAGGGGAGACAGGATGGAGGGACTCAGCCCTGCTGTAATCTTAGGGCACAACTTCCCCACTGAGGGATGCAGAGACCTTTTAACGAAAGTTAAATGTGCTTGTGTTGTGAGCGGCTGTTATTTTGGGACTAGAGCCTACACAGCTCAGCCTGTATACTAACTAATAAAACATCTGCgtgtaggccgggtgtggtggctcacgcctgtaaccccagcactttgggaggccgagatgggcggatcacgagagcaagagattgagaccatcctgg

Publications

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