Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC116271871P12
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr8:42902639-42903863  UCSC
Strand -
Parental Sequence XM_031660630.1
Parental seq. overlap 781 bp
Parental seq. overlap (%) 77.7%
Genomic Region Intragenic (SPIDR)
Retrocopy Summary LOC116271871P12, located on chr8:42902639-42903863, is a retrocopy of the parental gene LOC116271871. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC116271871
Full Name N/A
Also known as -
Coordinate chrX:74963647-74968317
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS4XP25
Chimpanzee Pan troglodytes RPS4XP7
Bonobo Pan paniscus RPS4XP7
Gorilla Gorilla gorilla RPS4XP6
Orangutan Pongo abelii RPS4XP9
Green monkey Chlorocebus sabaeus LOC103232177P8
Crab-eating macaque Macaca fascicularis RPS4XP11
Rhesus Macaca mulatta RPS4XP11
Golden snub-nosed monkey Rhinopithecus roxellana RPS4XP13
Sheep Ovis aries RPS4XP1
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC116271871P12
CTCTTTCCGTGCCTAATGCAGCCATGGCTGGTGGTCCCAAGCAGCATCTAAAGCGGGTAGCAACTCCAAAACATTGGATGCTGGCTAAATTGCCCAGTGTGTTTGTTCATCGTCCATCCACCAGTCCCCACAAGTTGACAGTGTCTCCCCATCATCATTTTCCTAAGGAACAGACTTAAGTATGCCTTGACAAGAGATGAAGTAAAGAAgatttgtgataaagaaagagagaagatttgCATGCAGTGGTTCATTAAGATCAATGGCAATGTTCAAACTGATACAACCCATCCCACTGGATTCACAGACGTCATGGGCATTGACTAGATAGGAGAGAATTTTCGTCTCATCTATGATACGAAGGGTTGCTTTGCTGTACATCGTATTACACCTGAGGAGCCCAAGTACAAATTGTGCAAAGTGAGAAAAATCTTCGTGGGCACAAAAAGAATCCCTCATCTGGTGACTCATGATGCTTGCATCATCTGCTACCCTGATCCCCTCCATCAAGGTGAATGATCCCATTCGGACTGAAATGGAAACTGGCAAGATCACTGATTTCATCAAGTTTGGCACTGGTAACCTGTGGATGGTGAATGGAGGTGCTAACTTGGGAAGAATTGGTGTCATCACCCACAGAGAAAGGCACCCTTGATCTTTTGATGTGGTTCACATAAAAGATGCCAATGGCAACAGCTTTGCCACCCGGCTTTCCAACATTTTTTCTACTGGCAAAGGCAACAAACCATGAATTTCTCTTCTCCGAGGAAAGGTATATGCCTCACCATTGCtgaagagagagacaagagaCTGGCAGCCAAACAGAGCAGTGGGTGAAATGGTCTCTGGGTGACAGATTAGATCTTtgttcataattaaaaataatgtggcatgattaataa
>XM_031660630.1
AGCGCGCCAGCAAAGGGCTGAACTGGGCGGAGCATCTCAATAGCCGGCGCGCGCAGTCTCCGGGCCCAATTTCTACGCGCACCGGAAGACGGAGGTCCTCTTTCCTTGCCTAACGCAGCCATGGCTCGTGGTCCCAAGAAGCATCTGAAGCGGGTAGCAGCTCCAAAGCATTGGATGCTGGATAAATTGACCGGTGTGTTTGCTCCTCGTCCATCCACCGGTCCCCACAAGTTGAGAGAGTGTCTCCCCCTCATCATCTTCCTAAGGAACAGACTTAAGTATGCCCTGACAGGAGATGAAGTAAAGAAGATTTGCATGCAGCGGTTCATTAAGATCGATGGCAAGGTCCGAACTGATATAACCTACCCTGCTGGATTCATGGATGTCATCAGCATTGACAAGACGGGAGAGAATTTCCGTCTGATCTATGACACCAAGGGTCGCTTTGCTGTACATCGTATTACAcctgaggaggccaagTACAAGTTATGCAAAGTGAGAAAGATCTTTGTGGGCACAAAAGGAATCCCTCATCTGGTGACTCATGATGCCCGTACCATCCGCTACCCCGATCCCCTCATCAAGGTGAATGATACCATTCAGATTGATTTGGAGACTGGCAAGATTACTGATTTCATCAAGTTCGACACTGGTAACCTGTGTATGGTGACTGGAGGTGCTAACCTGGGAAGAATTGGTGTGATCACCAACAGAGAGAGGCATCCTGGATCTTTTGACGTGGTTCACGTGAAAGATGCCAATGGCAACAGCTTTGCCACTCGACTTTCCAACATTTTTGTTATTGGCAAGGGCAACAAACCATGGATTTCTCTTCCCCGAGGAAAGGGTATCCGCCTCACCATTgctgaagagagagacaaaagactGGCGGCCAAACAGAGCAGTGGGTGAAATGGGTCCCTGGGTGCCATGTCAGACCTTTGTAcgtaattaaaaatattgtggCAGGATTAAtagca

Publications

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