Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC116271871P29
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Papio anubis
Coordinates chrX:103349740-103349979  UCSC
Strand +
Parental Sequence XM_031660630.1
Parental seq. overlap 201 bp
Parental seq. overlap (%) 20.5%
Genomic Region Intergenic
Retrocopy Summary LOC116271871P29, located on chrX:103349740-103349979, is a retrocopy of the parental gene LOC116271871. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC116271871
Full Name N/A
Also known as -
Coordinate chrX:74963647-74968317
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS4XP27
Chimpanzee Pan troglodytes RPS4XP22
Bonobo Pan paniscus RPS4XP23
Gorilla Gorilla gorilla RPS4XP23
Orangutan Pongo abelii RPS4XP25
Gibbon Nomascus leucogenys RPS4XP26
Green monkey Chlorocebus sabaeus LOC103232177P26
Crab-eating macaque Macaca fascicularis RPS4XP28
Rhesus Macaca mulatta RPS4XP27
Marmoset Callithrix jacchus RPS4XP46
Mouse lemur Microcebus murinus RPS4XP47
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC116271871P29
GGTACTAGCCTGGGAAGAACTGGTGTGACTTAGAGAGAAAGACATTCTGGTTGTTTTAATGTGGTTCAGGTGAAACATGCCAATGGCAACAGCTTTGCCACCTGGCTTTCCAACATTTTTGTTATTAGCAAAGGCAATAAACCACAGATTTGTCTTCCTCAGTGAAAAGGTATCCACTTCACCATTGCTGAACAGAAAGACAAGAGAATGCTGGCCAAACCCAGCAGTGGGTGAAATG
>XM_031660630.1
AGCGCGCCAGCAAAGGGCTGAACTGGGCGGAGCATCTCAATAGCCGGCGCGCGCAGTCTCCGGGCCCAATTTCTACGCGCACCGGAAGACGGAGGTCCTCTTTCCTTGCCTAACGCAGCCATGGCTCGTGGTCCCAAGAAGCATCTGAAGCGGGTAGCAGCTCCAAAGCATTGGATGCTGGATAAATTGACCGGTGTGTTTGCTCCTCGTCCATCCACCGGTCCCCACAAGTTGAGAGAGTGTCTCCCCCTCATCATCTTCCTAAGGAACAGACTTAAGTATGCCCTGACAGGAGATGAAGTAAAGAAGATTTGCATGCAGCGGTTCATTAAGATCGATGGCAAGGTCCGAACTGATATAACCTACCCTGCTGGATTCATGGATGTCATCAGCATTGACAAGACGGGAGAGAATTTCCGTCTGATCTATGACACCAAGGGTCGCTTTGCTGTACATCGTATTACAcctgaggaggccaagTACAAGTTATGCAAAGTGAGAAAGATCTTTGTGGGCACAAAAGGAATCCCTCATCTGGTGACTCATGATGCCCGTACCATCCGCTACCCCGATCCCCTCATCAAGGTGAATGATACCATTCAGATTGATTTGGAGACTGGCAAGATTACTGATTTCATCAAGTTCGACACTGGTAACCTGTGTATGGTGACTGGAGGTGCTAACCTGGGAAGAATTGGTGTGATCACCAACAGAGAGAGGCATCCTGGATCTTTTGACGTGGTTCACGTGAAAGATGCCAATGGCAACAGCTTTGCCACTCGACTTTCCAACATTTTTGTTATTGGCAAGGGCAACAAACCATGGATTTCTCTTCCCCGAGGAAAGGGTATCCGCCTCACCATTgctgaagagagagacaaaagactGGCGGCCAAACAGAGCAGTGGGTGAAATGGGTCCCTGGGTGCCATGTCAGACCTTTGTAcgtaattaaaaatattgtggCAGGATTAAtagca

Publications

PMID - Link Title