Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name MRPS21P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr1:128532493-128532874  UCSC
Strand +
Parental Sequence XM_031652525.1
Parental seq. overlap 349 bp
Parental seq. overlap (%) 65%
Genomic Region Intergenic
Retrocopy Summary MRPS21P1, located on chr1:128532493-128532874, is a retrocopy of the parental gene MRPS21. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MRPS21
Full Name N/A
Also known as -
Coordinate chr1:120775346-120788662
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes MRPS21P1
Bonobo Pan paniscus MRPS21P1
Gorilla Gorilla gorilla MRPS21P1
Orangutan Pongo abelii MRPS21P3
Gibbon Nomascus leucogenys MRPS21P4
Green monkey Chlorocebus sabaeus MRPS21P4
Crab-eating macaque Macaca fascicularis MRPS21P3
Rhesus Macaca mulatta MRPS21P3
Golden snub-nosed monkey Rhinopithecus roxellana MRPS21P3
Human Homo sapiens Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MRPS21P1
TGCCAGGCTCTGCAGAGTGGAGATTTAAATCCAAGGTCATGGCAAAACATCTGAAGTTCATCACCAGTGCTGCGATGGTACAGGAAGGAAATGTGGAAGGTGCATACAGGACCCTAAACAGAATCCTCACTATGGATGGGCTCCTTGAGGACACTAAACGTCCACGGTATAATGAAAAGCCATGCCACCAGTGACAGAGGGAAAGCTATGAAAGGTGCCAGCAGATCTACAACATGGAAACGGCTCCAAGATCAACTTCTTGATGTGAAAGAATCGGGCAGATCTGTGGCAGGGTTGCTGAGGCCTGTGGATGGGACACCCAGTATGAAACCCTCATCCAATTTTGTctccatctcttttctttctacaaTCTCATTTCCTA
>XM_031652525.1
AGGACGTTGCTATGGTTTCCACGCACGTCGTCTCCCTCAGCCTGTTTCTTTGCGCGGCGCTGGCGATTGCGTAGTTTCCGCTTCCGGTAGTGAGGAGGCCAGGCTCTACAGAGTGAAGGTTTAAATCCAAGGTCATGGCAAAACATCTGAAGTTCATCGCCAGGACTGTGATGGTACAGGAAGGGAACGTGGAAAGTGCATACAGGCTCCTAAACAGAATCCTCACTATGGATGGGCTCATTGAGGACATTAAACGTCGGCGGTATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTATGAAAGGTGCCGGCGGATCTACAACATGGAAATGGCTCGCAAGATCAACTTCTTGATGCGAAAGAATCGGGCAGATCCGTGGCAGGGCTGCTGAGGCCTGTGGATGGGACACCCAGTGCGAAACCCTCATCCAGTTTTGTctccatctcttttctttgtacaaTCCCATTTCCTAAACTCAAATCACATGTCTGCAAAAAGGCCTCCAAATATAGAAACAATTCCATTAGTCA

Publications

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