Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL7AP27
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr4:83522023-83522858  UCSC
Strand +
Parental Sequence NM_001284957.1
Parental seq. overlap 801 bp
Parental seq. overlap (%) 90.9%
Genomic Region Intergenic
Retrocopy Summary RPL7AP27, located on chr4:83522023-83522858, is a retrocopy of the parental gene RPL7A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL7A
Full Name N/A
Also known as -
Coordinate chr15:5318732-5322189
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus LOC103240161P23
Rhesus Macaca mulatta RPL7AP26
Baboon Papio anubis RPL7AP29
Golden snub-nosed monkey Rhinopithecus roxellana RPL7AP15
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL7AP27
GCTCTCTCCTCCCACTGCCCAAGATGCCAAAAGGAAAGAAGGCCAAGGGAAAGAAGGTGGCTCCGGCCCCTGCTGTCATGAAAAAGCAGGAGGCCAAGAAAGTGGTGAATCCCCTGTTTGAGAAAAGACCTAAGAATTTTGGCATTGGACAGGACATCCAGTCCAAAAGAGACCTCACCCGCTTTGTGAAACGGCCCTGCTGTATCAGGTTGCAGCGGCAGAGAGCCATCCTCTATAAGCAGCTGAAAGTGCCTCCTGCTATTAACCAGTTCACCCAGGCCCTGGACCGCCAGACAGCTACTCAGCTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAAGCAAGAGAAGCAGCAGAGGCTGTTGGCCCGGGCGAGAAGAAAGCTGCTAGCAAAGGGGACGTCCCCACTAAGAGACCACCTGTCCTTCGTGCAGGAGTTAACACCATCACCACCTTCGTGGAGAACAAGAAAGCTCAGCTGGTGGTGATTGCACACGATGTGGATCCCATCGAGCTGGTTGTCTTCTTGCCTGCCCTGTGTCGTAAAATGGGGGTCCCTTACTGCATTATCAAGGGGAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACCTGCACCACTGTCGCCTTCACACACGTGAACTAGGAAGACAAAGGCGCTTCAGCTAAGCTGGTGGAAGCTATCAGGACCAATTACAACGACAGATACGATGAGATCCGCCGTCACTGGGGCGGCAATGTCCTGGGTCCCAAGTCTTTGGCTCGTATCGCCAAGCTCGAAAAGGCAAAGGCTAAAGAACTTGCCACTAAACTGGGTTAAGTGTACACTGTT
>NM_001284957.1
CTCTTTCCTCCCGCCGCCCAAGATGCCGAAAGGAAAGAAGGCCAAGGGAAAGAAGGTGGCTCCGGCCCCTGCTGTCGTGAAAAAGCAGGAGGCCAAGAAAGTGGTGAATCCCCTGTTTGAGAAAAGACCTAAGAATTTTGGCATTGGACAGGACATCCAGCCCAAAAGAGACCTCACCCGCTTTGTGAAATGGCCTCGCTATATCAGGTTGCAGCGGCAGAGAGCCATCCTCTATAAGCGGCTGAAAGTGCCTCCTGCTATTAACCAGTTCACCCAGGCCCTGGACCGCCAAACAGCTACTCAGCTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAAACAAGAGAAGAAGCAGAGGCTGTTGGCCCGGGCCGAGAAGAAAGCTGCTGGCAAAGGGGATGTCCCCACTAAAAGACCACCTGTCCTTCGAGCAGGAGTTAACACCGTCACCACCTTGGTGGAGAACAAGAAGGCTCAGCTGGTGGTGATTGCACATGACGTAGATCCCATCGAGCTGGTTGTCTTCTTGCCTGCCCTGTGTCGTAAAATGGGGGTCCCTTACTGCATTATCAAGGGGAAGGCCAGACTGGGCCGTCTAGTCCACAGGAAGACCTGCACCACTGTCGCCTTCACACAGGTGAACTCGGAAGACAAAGGCGCTTTGGCTAAGCTGGTGGAAGCTATCAGGACCAATTACAACGACAGATACGATGAGATCCGCCGTCACTGGGGCGGCAATGTCCTGGGTCCCAAGTCTGTGGCTCGTATCGCCAAGCTCGAAAAGGCAAAGGCTAAAGAACTTGCCACTAAGCTGGGTTAAATGTACACTGTTGAGTTTTCTGTACATAAAAATAATTAAAATTCAAATTTTCCTTCA

Publications

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