Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PGAM1P17
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Papio anubis
Coordinates chrX:98764606-98765832  UCSC
Strand +
Parental Sequence XM_003904075.2
Parental seq. overlap 1035 bp
Parental seq. overlap (%) 55%
Genomic Region Intragenic (SLC9A7)
Retrocopy Summary PGAM1P17, located on chrX:98764606-98765832, is a retrocopy of the parental gene PGAM1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PGAM1
Full Name N/A
Also known as -
Coordinate chr11:36128188-36136332
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PGAM1P7
Chimpanzee Pan troglodytes PGAM1P13
Bonobo Pan paniscus PGAM1P15
Gorilla Gorilla gorilla PGAM1P13
Orangutan Pongo abelii PGAM1P13
Gibbon Nomascus leucogenys PGAM1P13
Green monkey Chlorocebus sabaeus LOC103216807P13
Crab-eating macaque Macaca fascicularis PGAM1P17
Rhesus Macaca mulatta PGAM1P16
Golden snub-nosed monkey Rhinopithecus roxellana PGAM1P9
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PGAM1P17
ACCATTGCCGCCTACAAGCTGTGGCTGATCTGGCACGGGGAGAGTGCCTGGAACCTGGAGAACTGCTTCAGTGGCTGGAAGGACACTCCCTGAGCCCGGGGGCCACAAGGAGGCGAAGTGAGGTAGACAGGCACTGCAAGATGCTGGCTGTAAGTTCAACATCTGCTTTACCTCAGTGCAGAAGAGAGCAATCTGGGCCCTCTGGACAGTGCCAGATGCCACTGACCTGATGTGGCTGCCCGTAGTGAGGACTTGGCATCTTAATGAGTGGCACTCTGGGCTTCTGACCGACCTCCATAAAGCAGAAACTGCTGCCAAGCATGGTAAAGATCTGGAGGCGCTCCTGTGATGTCCCACCACCTCTCATAGAGCCCAATCATCCCTTCTACGGCAGCATCAGTAAAGATCGCAGGTATGTAGACCTCACTGAAGATCAGCTACCCTCTTGTGAGGGTCTGAAGGTCACTTCTGCCAGACCTCTGCCCTTTTGGAATGAAGAAATAGTTCCCCAGATTGAGGAGGGGAAATGGGTACTGATTACAGCCCACGGCAACAGCCTCCCCGGCATTGTCAAGCATCTGCAGGGTCTCTCTGCGGAGAGGAACCTGCCGACTGCTATTCCCGTTGTCTATGAATTGGACAAGAACTTGAAGCACATCAGGCGCATGCAGTTCCTGGGGGATAAAGAGACCGTGTGTAAAGCCGTGGAAGCTGTGGCTGCCCAGGGCAAAGTGAAGAGGTAAAGGCCAGCGGATAGACTACTTTCCCTGGGAACACCCGCCTTGCCcatccctttctctttccctccccactGCACATGTCACACTGACCACATCTGTAGGCATCTGAAGTTGTAGCTGCAGATGGGTACCAGTGACTCCCATttttcatttcagccatttttctcctgcacccactgtcttcACACAATCTAGTCAAGATAGCACCTCCAGGGAGGGCACGGCTTCTCAGTCCAAGCCCAGGGAAAACTCCCCTTATCCAAAAGAGTTGAGAGGTAGTGACTTGGGTTTTTACCAGAGCTTTGTGTACTAAGGACCTGCTTGAGTAGGAGATAGGGAGGAACCATGCTAAGGCACGGCCAAAGAGGAGAAGCAAGAGAGCCTGTTTGCCCCCAGGAGCCAGTCCTGTGTTCTTCTGTAGTCAGGCCACTGCCTGGAGGGCTCTAGTCATTCCAGTGGAAGATAAATGTAACCAGCATGgtgatgt
>XM_003904075.2
GCGGCGCATGCGCACACCTGGCGGGCGGAGAGCGGTCCAGAGCAAGCAGAAAGATTTGGGCGAGACTGTGCGCGGGAGCCGGGCCATGCGGCGCGAGCGCGCAGGCGCGGCAGAGGGGGCGGGCTGCTACTCCGGAATCTGCGAACCGCAGTCGGTGCCGCATTCTCAGCTCGCCGCCATGGCCGCCTACAAACTGGTGCTGATCCGGCACGGCGAGAGCGCATGGAACCTGGAGAACCGCTTCAGCGGCTGGTACGACGCCGACCTGAGCCCAGCGGGCCACGAGGAGGCGAAGCGCGGCGGGCAGGCGCTGCGAGATGCTGGCTATGAGTTTGACATCTGCTTCACCTCAGTACAGAAGAGAGCGATCCGGACCCTCTGGACAGTGCTAGATGCCATTGATCAGATGTGGCTGCCAGTGGTGAGGACTTGGCGCCTCAATGAGCGGCACTATGGGGGTCTAACCGGTCTCAATAAAGCAGAAACTGCTGCAAAGCATGGTGAAGCCCAGGTGAAGATCTGGAGGCGCTCCTATGATGTCCCACCACCTCCGATGGAGCCCGACCACCCTTTCTACAGCAACATCAGTAAGGATCGCAGGTATGCAGACCTCACAGAAGATCAGCTACCCTCCTGTGAGAGTCTGAAGGACACTATTGCCAGAGCTCTGCCCTTCTGGAATGAAGAAATAGTTCCTCAGATCAAGGAGGGGAAACGTGTACTGATTGCAGCCCACGGCAACAGCCTCCGGGGCATTGTCAAGCATCTGGAGGGTCTCTCTGAAGAGGCTATCATGGAGCTGAACCTGCCGACTGGTATTCCCATTGTCTATGAATTGGACAAGAACTTGAAGCCTATCAAGCCCATGCAGTTCCTGGGGGATGAAGAGACGGTGCGCAAAGCCATGGAAGCTGTGGCCGCCCAGGGCAAGGCCAAGAAGTGAAGGCCAGCGGGGAGGATACTGTCCCCAGGAGCACCCTCCCTGCCCGTCTTgtccctctgcccctcccacctGCACATGTCACACTGACCACATCTGTAgacatcttgagttgtagctgCAGATGGGGACTGGTGGCTCccattttcattttagccattttgtcTTCTGCACCCACTCCCTTCGTACAATCTAGTGAGAATAGCACTTCTAGAGCATAGGTTCTCAGTCCAAGCTGTGGAAAAGCTCCCCTTATCCAACAGAGTTTAAAGGTAGTAACTTGGGTTTTTGCAAGTTCTTTGTTTACTAAGGACTTGTGGGGAGGAATCATGCTAAGCCATGACCAATGAGGAGAAGCAAGAGCCTCTCTGTCCCCAGGAGCCAGTCCTCTGCTCTTCTGCAGTCAGGCCACTGCCTGGGGGCTCTAGTCATTCCAGTGGAAGATGATGTAACCTGCATGGTGATGTGACAGCTGTTTCCTCCCTGACCCTAGAGGACCTGGCTCTAGAAGTTTGGGATCAATCCTGAATTTAGTTATGtgttacatttacttttattaaaaaagtatagtatatataaataatacaaaacagtAACCCTTCTGGGGTTTCTTGTGGCGGTTGAAATAGTCCCACATGTGGTCATCAGAAAATAAGCCATTCCTCATACCAGTATGGGATCAGTTCCTTGACCTCTGAGGGGCAGGAGTGCTTCCTGCTGTGTGTGTTAGAATCCCTTCCTGCCTTGTTTCATGGCAGTGAAACGTCCCTTGGTCCTGCCCAAGTGTGTCTTTCACTGATGTCTGAATCATGTTCTAGTTGCTTGGCTCTGCCACATGGGTCCAGTGTTCACCTGAGCATAACTGTACTAAATCCTTTTTCCAGATCAGTATAATAAAGGAGTGATGTGCAATAGT

Publications

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