Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL21P22
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr3:98134699-98135236  UCSC
Strand -
Parental Sequence XM_003913699.5
Parental seq. overlap 482 bp
Parental seq. overlap (%) 54.8%
Genomic Region Intergenic
Retrocopy Summary RPL21P22, located on chr3:98134699-98135236, is a retrocopy of the parental gene RPL21. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL21
Full Name N/A
Also known as -
Coordinate chr15:6545130-6550578
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL21P44
Chimpanzee Pan troglodytes RPL21P31
Bonobo Pan paniscus RPL21P31
Gorilla Gorilla gorilla RPL21P40
Orangutan Pongo abelii RPL21P38
Green monkey Chlorocebus sabaeus RPL21P19
Marmoset Callithrix jacchus RPL21P21
Gibbon Nomascus leucogenys Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL21P22
TTCCTTTCGGCCAAAACTGCCACCTTCCAGTAATTGGCCACAATGATGAACACAAATGGAAAGAGGAGAGGCACCGATACACATTCTCtaggccttttagaaaacatggacTTGTTCCTTTGGCCACGCATATGCGAGTCTTTAAGAAAGGTGATACTGTAGACATCAACGGAATGGGTactgttcaaaaaggaatgccCCACAAGTGTTACCATGGCAAAACTGGTACAATGGTCTGCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGGGGAAGATTCTTGCCGAATGAAATAATGTGCATGGTGAGCACGTTAAGCGCTCTAAAAGCCAAGATAGCGTCCTGAAATGtgtgaaggaaaatgatcagaaaaagaaggaagccaaAGAGGAAggtacctgggttcaagtgaagcACCAACCTGCTCCACCCAGCGAAGCACACTTTGTGAAAGCCAGtgggaaggagcctgagctgTTGGAACCTATTCCCTATGAATTCATGGCATTATAggtgttaataaaataaaataaaac
>XM_003913699.5
CGGGTCGTCGGCGTCCTGTTGGTCGTCCTTGAAGGCCCCTTTCCGGGCTGTCTGACACGATACAAGTGTCGGCTTGTGTTGGCCGGTGGTCTTTCTTTCgcaagaaaggaaaatatcctcacagACTTTCTGTGTTCTCAGAGACGATCTTCTTCCCTAGAAAGGAGTCGCTTTCGGTTGGCGTTTCCCTCAGGCAGCGCCGTGGGCAGCCCACAGGCCCTTGTAAGGCGCGCGCCGCGGCCCCGCCTCTTTCCTTTCGGCCGGAACCGCCATCTTCCAGTAATTTGCCAAAATGAcgaacacaaagggaaagaggagaggcaccCGATATATGTTCTCtaggccttttagaaaacatgGAGTTGTTCCTTTGGCCACGTATATGCGAATCTATAAGAAAGGTGATATCGTAGACATCAAGGGAATGGGTACCGTTCAAAAAGGAATGCCCCACAAGTGTTACCATGGCAAAACTGGGAGAGTCTACAACGTTACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTTAAgggcaagattcttgccaagagaattaatgtACGTATTGAGCACATTAAGCATTCTAAGAGCAGAGATAGCTTCCTGAAACGcgtgaaggaaaatgatcagaaaaagaaagaagccaaagagaaaggtacctGGGTTCAACTGAAGCGCCAGcctgctccacccagagaagcacactttgtgagaaccaatgggaaggagcctgagctgctggaacctattccctatgaattcatggcataataggtgttaaaaaaaaaaaataaaagacctctgggctgaaaaatgtttctcttcattGAGTAGAAGTGTGATGTCCTCTCCCCCAAAGAAATACTTAAAGCAAA

Publications

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